Hb_001013_060

Information

Type -
Description -
Location Contig1013: 77155-77520
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001013_060 0.0 - - -
2 Hb_000203_150 0.0673441088 - - PREDICTED: uncharacterized protein LOC105116038 [Populus euphratica]
3 Hb_001610_060 0.1018128918 - - hypothetical protein TRIUR3_12067 [Triticum urartu]
4 Hb_000840_220 0.1038584856 - - PREDICTED: RING-H2 finger protein ATL78-like [Jatropha curcas]
5 Hb_000563_570 0.1066018813 - - hypothetical protein JCGZ_18895 [Jatropha curcas]
6 Hb_000720_060 0.1167354931 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
7 Hb_003582_010 0.1262811338 - - hypothetical protein EUGRSUZ_B026451, partial [Eucalyptus grandis]
8 Hb_000002_230 0.1264102833 - - RING/U-box superfamily protein [Theobroma cacao]
9 Hb_000705_070 0.1303189013 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001775_060 0.1303355164 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005900_020 0.1352588022 - - -
12 Hb_012879_010 0.1443663371 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000616_100 0.1492475711 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
14 Hb_106728_020 0.149948752 - - cytochrome P450, putative [Ricinus communis]
15 Hb_012553_030 0.1501581306 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
16 Hb_000032_340 0.1530096342 - - PREDICTED: uncharacterized protein LOC105645669 [Jatropha curcas]
17 Hb_179118_010 0.1566707852 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
18 Hb_016120_020 0.1573447919 - - PREDICTED: tetrahydrocannabinolic acid synthase-like [Jatropha curcas]
19 Hb_015884_010 0.1573942781 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X1 [Jatropha curcas]
20 Hb_110854_010 0.1577067324 - - -

Gene co-expression network

sample Hb_001013_060 Hb_001013_060 Hb_000203_150 Hb_000203_150 Hb_001013_060--Hb_000203_150 Hb_001610_060 Hb_001610_060 Hb_001013_060--Hb_001610_060 Hb_000840_220 Hb_000840_220 Hb_001013_060--Hb_000840_220 Hb_000563_570 Hb_000563_570 Hb_001013_060--Hb_000563_570 Hb_000720_060 Hb_000720_060 Hb_001013_060--Hb_000720_060 Hb_003582_010 Hb_003582_010 Hb_001013_060--Hb_003582_010 Hb_000203_150--Hb_001610_060 Hb_000002_230 Hb_000002_230 Hb_000203_150--Hb_000002_230 Hb_000032_340 Hb_000032_340 Hb_000203_150--Hb_000032_340 Hb_000203_150--Hb_000720_060 Hb_183209_020 Hb_183209_020 Hb_000203_150--Hb_183209_020 Hb_001610_060--Hb_000720_060 Hb_016120_020 Hb_016120_020 Hb_001610_060--Hb_016120_020 Hb_001610_060--Hb_000032_340 Hb_000856_250 Hb_000856_250 Hb_001610_060--Hb_000856_250 Hb_000840_220--Hb_000563_570 Hb_006890_050 Hb_006890_050 Hb_000840_220--Hb_006890_050 Hb_000705_070 Hb_000705_070 Hb_000840_220--Hb_000705_070 Hb_005900_020 Hb_005900_020 Hb_000840_220--Hb_005900_020 Hb_000840_220--Hb_003582_010 Hb_000563_570--Hb_006890_050 Hb_000563_570--Hb_000705_070 Hb_012553_030 Hb_012553_030 Hb_000563_570--Hb_012553_030 Hb_001775_060 Hb_001775_060 Hb_000563_570--Hb_001775_060 Hb_000069_630 Hb_000069_630 Hb_000720_060--Hb_000069_630 Hb_000720_060--Hb_001775_060 Hb_000720_060--Hb_016120_020 Hb_008385_010 Hb_008385_010 Hb_003582_010--Hb_008385_010 Hb_001013_070 Hb_001013_070 Hb_003582_010--Hb_001013_070 Hb_002511_050 Hb_002511_050 Hb_003582_010--Hb_002511_050 Hb_003582_010--Hb_000705_070 Hb_001322_010 Hb_001322_010 Hb_003582_010--Hb_001322_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 49.9673 5.97466 125.529 0.1958 0.825393
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 29.0217 4.76808

CAGE analysis