Hb_001014_030

Information

Type -
Description -
Location Contig1014: 24801-41199
Sequence    

Annotation

kegg
ID rcu:RCOM_1438200
description ATP binding protein, putative
nr
ID XP_002512662.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q5W7F2
description ADP-ribosylation factor GTPase-activating protein AGD3 OS=Arabidopsis thaliana GN=AGD3 PE=1 SV=1
trembl
ID B9RFZ3
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1438200 PE=4 SV=1
Gene Ontology
ID GO:0005829
description adp-ribosylation factor gtpase-activating protein agd3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00684: 26609-28843 , PASA_asmbl_00685: 28923-29153 , PASA_asmbl_00686: 31820-41554 , PASA_asmbl_00687: 31820-41095
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001014_030 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_000003_250 0.0595596013 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
3 Hb_000840_250 0.0596811787 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
4 Hb_001633_210 0.0611713107 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
5 Hb_000614_250 0.0657418353 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
6 Hb_000297_010 0.0665252448 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
7 Hb_002450_020 0.0673572016 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
8 Hb_164010_030 0.0722153595 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
9 Hb_009178_030 0.0724602608 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001377_490 0.0726750714 - - PREDICTED: uncharacterized protein LOC105642821 [Jatropha curcas]
11 Hb_002620_020 0.0730654049 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
12 Hb_001959_190 0.0732380866 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
13 Hb_003371_090 0.0758580017 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
14 Hb_000041_100 0.0761433935 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
15 Hb_010128_080 0.0762580449 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
16 Hb_003847_030 0.0763873861 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Jatropha curcas]
17 Hb_000866_170 0.0778329308 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_000185_040 0.0793814356 - - PREDICTED: uncharacterized protein LOC103343434 [Prunus mume]
19 Hb_000230_390 0.0799976863 - - PREDICTED: F-box/kelch-repeat protein At3g23880 [Jatropha curcas]
20 Hb_000185_030 0.0803518473 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001014_030 Hb_001014_030 Hb_000003_250 Hb_000003_250 Hb_001014_030--Hb_000003_250 Hb_000840_250 Hb_000840_250 Hb_001014_030--Hb_000840_250 Hb_001633_210 Hb_001633_210 Hb_001014_030--Hb_001633_210 Hb_000614_250 Hb_000614_250 Hb_001014_030--Hb_000614_250 Hb_000297_010 Hb_000297_010 Hb_001014_030--Hb_000297_010 Hb_002450_020 Hb_002450_020 Hb_001014_030--Hb_002450_020 Hb_005463_100 Hb_005463_100 Hb_000003_250--Hb_005463_100 Hb_002046_180 Hb_002046_180 Hb_000003_250--Hb_002046_180 Hb_010128_080 Hb_010128_080 Hb_000003_250--Hb_010128_080 Hb_000876_070 Hb_000876_070 Hb_000003_250--Hb_000876_070 Hb_001799_210 Hb_001799_210 Hb_000003_250--Hb_001799_210 Hb_000840_250--Hb_001633_210 Hb_000840_250--Hb_000614_250 Hb_000840_250--Hb_000297_010 Hb_000185_030 Hb_000185_030 Hb_000840_250--Hb_000185_030 Hb_000230_390 Hb_000230_390 Hb_000840_250--Hb_000230_390 Hb_000250_060 Hb_000250_060 Hb_001633_210--Hb_000250_060 Hb_010812_120 Hb_010812_120 Hb_001633_210--Hb_010812_120 Hb_001633_210--Hb_000614_250 Hb_001633_210--Hb_000185_030 Hb_001633_210--Hb_000297_010 Hb_000614_250--Hb_002450_020 Hb_000710_060 Hb_000710_060 Hb_000614_250--Hb_000710_060 Hb_003847_030 Hb_003847_030 Hb_000614_250--Hb_003847_030 Hb_000297_010--Hb_000185_030 Hb_004724_150 Hb_004724_150 Hb_000297_010--Hb_004724_150 Hb_015934_040 Hb_015934_040 Hb_000297_010--Hb_015934_040 Hb_000245_040 Hb_000245_040 Hb_000297_010--Hb_000245_040 Hb_000041_100 Hb_000041_100 Hb_000297_010--Hb_000041_100 Hb_002450_020--Hb_000041_100 Hb_011386_010 Hb_011386_010 Hb_002450_020--Hb_011386_010 Hb_002450_020--Hb_000297_010 Hb_005054_110 Hb_005054_110 Hb_002450_020--Hb_005054_110 Hb_002450_020--Hb_015934_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5442 13.4522 7.16581 15.2983 8.89994 14.6113
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.1101 16.2022 25.3563 13.3556 10.4158

CAGE analysis