Hb_001014_050

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig1014: 47588-51578
Sequence    

Annotation

kegg
ID rcu:RCOM_1438230
description hypothetical protein
nr
ID XP_012088721.1
description PREDICTED: uncharacterized protein LOC105647306 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JH78
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23099 PE=4 SV=1
Gene Ontology
ID GO:0003677
description gt-2-related family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00691: 47675-50805 , PASA_asmbl_00692: 49411-49808
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001014_050 0.0 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105647306 [Jatropha curcas]
2 Hb_005245_130 0.0708606365 - - PREDICTED: uncharacterized protein LOC105643730 [Jatropha curcas]
3 Hb_003849_060 0.075104887 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
4 Hb_002205_040 0.0760207926 - - nucleic acid binding protein, putative [Ricinus communis]
5 Hb_000794_050 0.0785660479 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
6 Hb_011942_080 0.079560434 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
7 Hb_000462_140 0.0799238683 - - PREDICTED: dnaJ homolog subfamily C member 28 [Jatropha curcas]
8 Hb_001575_100 0.0803939023 - - PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial [Jatropha curcas]
9 Hb_000236_100 0.0805784237 - - Dynein alpha chain, flagellar outer arm [Gossypium arboreum]
10 Hb_004044_020 0.0809610297 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
11 Hb_000116_180 0.0837034038 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
12 Hb_031939_010 0.0850995212 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
13 Hb_003467_010 0.0864267917 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
14 Hb_012670_140 0.0877700328 - - PREDICTED: pentatricopeptide repeat-containing protein At1g28690, mitochondrial [Jatropha curcas]
15 Hb_000926_190 0.0881914595 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
16 Hb_012799_110 0.0884884452 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
17 Hb_144787_030 0.0895363823 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
18 Hb_007026_030 0.0896925645 - - rubisco subunit binding-protein alpha subunit, ruba, putative [Ricinus communis]
19 Hb_004096_030 0.0899556432 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
20 Hb_000394_190 0.0905551982 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001014_050 Hb_001014_050 Hb_005245_130 Hb_005245_130 Hb_001014_050--Hb_005245_130 Hb_003849_060 Hb_003849_060 Hb_001014_050--Hb_003849_060 Hb_002205_040 Hb_002205_040 Hb_001014_050--Hb_002205_040 Hb_000794_050 Hb_000794_050 Hb_001014_050--Hb_000794_050 Hb_011942_080 Hb_011942_080 Hb_001014_050--Hb_011942_080 Hb_000462_140 Hb_000462_140 Hb_001014_050--Hb_000462_140 Hb_004934_090 Hb_004934_090 Hb_005245_130--Hb_004934_090 Hb_003406_010 Hb_003406_010 Hb_005245_130--Hb_003406_010 Hb_000803_300 Hb_000803_300 Hb_005245_130--Hb_000803_300 Hb_004096_030 Hb_004096_030 Hb_005245_130--Hb_004096_030 Hb_005276_210 Hb_005276_210 Hb_005245_130--Hb_005276_210 Hb_031939_010 Hb_031939_010 Hb_005245_130--Hb_031939_010 Hb_000808_250 Hb_000808_250 Hb_003849_060--Hb_000808_250 Hb_000334_270 Hb_000334_270 Hb_003849_060--Hb_000334_270 Hb_003467_010 Hb_003467_010 Hb_003849_060--Hb_003467_010 Hb_011848_010 Hb_011848_010 Hb_003849_060--Hb_011848_010 Hb_000394_190 Hb_000394_190 Hb_003849_060--Hb_000394_190 Hb_002192_080 Hb_002192_080 Hb_003849_060--Hb_002192_080 Hb_023386_040 Hb_023386_040 Hb_002205_040--Hb_023386_040 Hb_002890_020 Hb_002890_020 Hb_002205_040--Hb_002890_020 Hb_000926_190 Hb_000926_190 Hb_002205_040--Hb_000926_190 Hb_000207_310 Hb_000207_310 Hb_002205_040--Hb_000207_310 Hb_022693_120 Hb_022693_120 Hb_002205_040--Hb_022693_120 Hb_000368_020 Hb_000368_020 Hb_000794_050--Hb_000368_020 Hb_000794_050--Hb_000926_190 Hb_033720_010 Hb_033720_010 Hb_000794_050--Hb_033720_010 Hb_001390_110 Hb_001390_110 Hb_000794_050--Hb_001390_110 Hb_000853_230 Hb_000853_230 Hb_000794_050--Hb_000853_230 Hb_006620_020 Hb_006620_020 Hb_000794_050--Hb_006620_020 Hb_011942_080--Hb_031939_010 Hb_011942_080--Hb_003467_010 Hb_007336_020 Hb_007336_020 Hb_011942_080--Hb_007336_020 Hb_000976_320 Hb_000976_320 Hb_011942_080--Hb_000976_320 Hb_001357_380 Hb_001357_380 Hb_011942_080--Hb_001357_380 Hb_012799_110 Hb_012799_110 Hb_011942_080--Hb_012799_110 Hb_000661_250 Hb_000661_250 Hb_000462_140--Hb_000661_250 Hb_070739_010 Hb_070739_010 Hb_000462_140--Hb_070739_010 Hb_001259_090 Hb_001259_090 Hb_000462_140--Hb_001259_090 Hb_005618_160 Hb_005618_160 Hb_000462_140--Hb_005618_160 Hb_003010_030 Hb_003010_030 Hb_000462_140--Hb_003010_030 Hb_022250_030 Hb_022250_030 Hb_000462_140--Hb_022250_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.395 15.2827 9.48251 5.34234 24.5206 25.8333
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.1759 21.3419 9.99847 9.22137 9.52786

CAGE analysis