Hb_001016_020

Information

Type -
Description -
Location Contig1016: 36096-38595
Sequence    

Annotation

kegg
ID rcu:RCOM_1498960
description hypothetical protein
nr
ID XP_002510907.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8VYS5
description Protein trichome birefringence-like 18 OS=Arabidopsis thaliana GN=TBL18 PE=2 SV=1
trembl
ID B9R9N2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1498960 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001016_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005170_020 0.2089606493 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
3 Hb_000111_200 0.215409701 - - PREDICTED: CYSTM1 family protein A-like [Cucumis melo]
4 Hb_023768_020 0.2201400312 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004453_190 0.2499538121 - - -
6 Hb_108670_010 0.2500703492 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
7 Hb_001404_030 0.2546567302 - - DWNN domain isoform 3 [Theobroma cacao]
8 Hb_004079_040 0.2579100551 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
9 Hb_139569_010 0.2587304601 - - hypothetical protein JCGZ_24635 [Jatropha curcas]
10 Hb_185754_010 0.2615498399 - - receptor protein kinase, putative [Ricinus communis]
11 Hb_001787_070 0.2666801031 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Camelina sativa]
12 Hb_003209_120 0.2669889959 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
13 Hb_000358_170 0.2725849393 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
14 Hb_010369_010 0.2728526237 - - conserved hypothetical protein [Ricinus communis]
15 Hb_026186_010 0.2771630541 - - hypothetical protein JCGZ_06344 [Jatropha curcas]
16 Hb_003023_080 0.278019608 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
17 Hb_000661_010 0.2792087145 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
18 Hb_000216_010 0.2796019434 - - carbon monoxide dehydrogenase [Streptomyces sp. CNQ-509]
19 Hb_055277_010 0.2803662164 - - PREDICTED: coenzyme Q-binding protein COQ10 homolog, mitochondrial [Jatropha curcas]
20 Hb_000021_010 0.2839097216 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001016_020 Hb_001016_020 Hb_005170_020 Hb_005170_020 Hb_001016_020--Hb_005170_020 Hb_000111_200 Hb_000111_200 Hb_001016_020--Hb_000111_200 Hb_023768_020 Hb_023768_020 Hb_001016_020--Hb_023768_020 Hb_004453_190 Hb_004453_190 Hb_001016_020--Hb_004453_190 Hb_108670_010 Hb_108670_010 Hb_001016_020--Hb_108670_010 Hb_001404_030 Hb_001404_030 Hb_001016_020--Hb_001404_030 Hb_005170_020--Hb_108670_010 Hb_055277_010 Hb_055277_010 Hb_005170_020--Hb_055277_010 Hb_005170_020--Hb_001404_030 Hb_001115_100 Hb_001115_100 Hb_005170_020--Hb_001115_100 Hb_104855_010 Hb_104855_010 Hb_005170_020--Hb_104855_010 Hb_010369_010 Hb_010369_010 Hb_005170_020--Hb_010369_010 Hb_000111_200--Hb_023768_020 Hb_000111_200--Hb_001404_030 Hb_003209_120 Hb_003209_120 Hb_000111_200--Hb_003209_120 Hb_000661_010 Hb_000661_010 Hb_000111_200--Hb_000661_010 Hb_001195_650 Hb_001195_650 Hb_000111_200--Hb_001195_650 Hb_008406_030 Hb_008406_030 Hb_000111_200--Hb_008406_030 Hb_023768_020--Hb_001404_030 Hb_023768_020--Hb_008406_030 Hb_023768_020--Hb_003209_120 Hb_001787_070 Hb_001787_070 Hb_023768_020--Hb_001787_070 Hb_004241_200 Hb_004241_200 Hb_023768_020--Hb_004241_200 Hb_129105_010 Hb_129105_010 Hb_004453_190--Hb_129105_010 Hb_139569_010 Hb_139569_010 Hb_004453_190--Hb_139569_010 Hb_021596_060 Hb_021596_060 Hb_004453_190--Hb_021596_060 Hb_026186_010 Hb_026186_010 Hb_004453_190--Hb_026186_010 Hb_133661_010 Hb_133661_010 Hb_004453_190--Hb_133661_010 Hb_005773_010 Hb_005773_010 Hb_108670_010--Hb_005773_010 Hb_000072_010 Hb_000072_010 Hb_108670_010--Hb_000072_010 Hb_108670_010--Hb_104855_010 Hb_108670_010--Hb_055277_010 Hb_000628_050 Hb_000628_050 Hb_108670_010--Hb_000628_050 Hb_001404_030--Hb_003209_120 Hb_001404_030--Hb_001115_100 Hb_027905_010 Hb_027905_010 Hb_001404_030--Hb_027905_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0709681 0.0305875 0.0812204 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0348287 0 0 0

CAGE analysis