Hb_001016_040

Information

Type transcription factor
Description TF Family: Orphans
Location Contig1016: 44703-57111
Sequence    

Annotation

kegg
ID rcu:RCOM_0572760
description histidine kinase 1 plant, putative (EC:2.7.13.3)
nr
ID XP_012066074.1
description PREDICTED: histidine kinase 1 isoform X1 [Jatropha curcas]
swissprot
ID Q9SXL4
description Histidine kinase 1 OS=Arabidopsis thaliana GN=AHK1 PE=1 SV=2
trembl
ID B9SUH7
description Histidine kinase 1 plant, putative OS=Ricinus communis GN=RCOM_0572760 PE=4 SV=1
Gene Ontology
ID GO:0005622
description histidine kinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00751: 49855-56983
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001016_040 0.0 transcription factor TF Family: Orphans PREDICTED: histidine kinase 1 isoform X1 [Jatropha curcas]
2 Hb_015884_010 0.1337994266 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X1 [Jatropha curcas]
3 Hb_103149_010 0.1346371885 - - hypothetical protein CISIN_1g0397312mg, partial [Citrus sinensis]
4 Hb_186495_010 0.1359876971 - - Phosphoprotein phosphatase [Theobroma cacao]
5 Hb_009476_160 0.1467323063 - - RING-H2 finger protein ATL2N, putative [Ricinus communis]
6 Hb_005396_030 0.1482360698 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000732_100 0.1515038282 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
8 Hb_000816_050 0.1535180599 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
9 Hb_183209_020 0.154984648 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
10 Hb_000692_230 0.1555201699 - - phospholipase d delta, putative [Ricinus communis]
11 Hb_002053_090 0.156608533 - - conserved hypothetical protein [Ricinus communis]
12 Hb_103541_010 0.1580179332 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
13 Hb_000090_020 0.1583316312 - - acyltransferase, putative [Ricinus communis]
14 Hb_004586_230 0.1583911382 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000103_190 0.1584065981 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
16 Hb_001934_010 0.1592818162 - - o-methyltransferase, putative [Ricinus communis]
17 Hb_050898_010 0.1594238484 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
18 Hb_012553_030 0.161533164 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
19 Hb_000497_170 0.1625027707 - - PREDICTED: uncharacterized protein LOC105647275 [Jatropha curcas]
20 Hb_064047_010 0.1638305308 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001016_040 Hb_001016_040 Hb_015884_010 Hb_015884_010 Hb_001016_040--Hb_015884_010 Hb_103149_010 Hb_103149_010 Hb_001016_040--Hb_103149_010 Hb_186495_010 Hb_186495_010 Hb_001016_040--Hb_186495_010 Hb_009476_160 Hb_009476_160 Hb_001016_040--Hb_009476_160 Hb_005396_030 Hb_005396_030 Hb_001016_040--Hb_005396_030 Hb_000732_100 Hb_000732_100 Hb_001016_040--Hb_000732_100 Hb_012553_030 Hb_012553_030 Hb_015884_010--Hb_012553_030 Hb_003939_090 Hb_003939_090 Hb_015884_010--Hb_003939_090 Hb_010642_010 Hb_010642_010 Hb_015884_010--Hb_010642_010 Hb_000714_070 Hb_000714_070 Hb_015884_010--Hb_000714_070 Hb_103541_010 Hb_103541_010 Hb_015884_010--Hb_103541_010 Hb_000468_050 Hb_000468_050 Hb_015884_010--Hb_000468_050 Hb_000604_050 Hb_000604_050 Hb_103149_010--Hb_000604_050 Hb_000733_090 Hb_000733_090 Hb_103149_010--Hb_000733_090 Hb_000702_040 Hb_000702_040 Hb_103149_010--Hb_000702_040 Hb_004586_230 Hb_004586_230 Hb_103149_010--Hb_004586_230 Hb_103149_010--Hb_003939_090 Hb_072153_010 Hb_072153_010 Hb_186495_010--Hb_072153_010 Hb_000069_630 Hb_000069_630 Hb_186495_010--Hb_000069_630 Hb_034688_030 Hb_034688_030 Hb_186495_010--Hb_034688_030 Hb_005056_120 Hb_005056_120 Hb_186495_010--Hb_005056_120 Hb_000367_320 Hb_000367_320 Hb_186495_010--Hb_000367_320 Hb_004282_040 Hb_004282_040 Hb_009476_160--Hb_004282_040 Hb_000638_180 Hb_000638_180 Hb_009476_160--Hb_000638_180 Hb_000692_230 Hb_000692_230 Hb_009476_160--Hb_000692_230 Hb_009476_160--Hb_004586_230 Hb_002004_010 Hb_002004_010 Hb_009476_160--Hb_002004_010 Hb_000403_100 Hb_000403_100 Hb_005396_030--Hb_000403_100 Hb_017700_030 Hb_017700_030 Hb_005396_030--Hb_017700_030 Hb_002035_130 Hb_002035_130 Hb_005396_030--Hb_002035_130 Hb_111985_090 Hb_111985_090 Hb_005396_030--Hb_111985_090 Hb_005643_080 Hb_005643_080 Hb_005396_030--Hb_005643_080 Hb_020301_010 Hb_020301_010 Hb_005396_030--Hb_020301_010 Hb_000537_090 Hb_000537_090 Hb_000732_100--Hb_000537_090 Hb_001318_230 Hb_001318_230 Hb_000732_100--Hb_001318_230 Hb_114733_010 Hb_114733_010 Hb_000732_100--Hb_114733_010 Hb_001269_530 Hb_001269_530 Hb_000732_100--Hb_001269_530 Hb_000090_020 Hb_000090_020 Hb_000732_100--Hb_000090_020 Hb_173107_020 Hb_173107_020 Hb_000732_100--Hb_173107_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.102287 6.61917 1.22178 10.7185 0.220705 0.579597
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0209471 0.0164848 0.126692 2.11191 1.8024

CAGE analysis