Hb_001016_060

Information

Type -
Description -
Location Contig1016: 86480-90460
Sequence    

Annotation

kegg
ID rcu:RCOM_0336780
description hypothetical protein
nr
ID XP_002532968.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T3Z9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0336780 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00754: 86478-90237 , PASA_asmbl_00755: 86708-87483 , PASA_asmbl_00756: 87510-90237
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001016_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006173_020 0.0603150545 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
3 Hb_002149_040 0.0808540318 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003605_070 0.0842814323 - - PREDICTED: angio-associated migratory cell protein [Jatropha curcas]
5 Hb_000692_260 0.08535593 - - PREDICTED: uncharacterized protein LOC105635282 [Jatropha curcas]
6 Hb_005016_030 0.0854920255 - - hypothetical protein JCGZ_16549 [Jatropha curcas]
7 Hb_000363_340 0.0858331387 - - PREDICTED: syntaxin-52-like isoform X2 [Jatropha curcas]
8 Hb_019871_020 0.0914286303 - - PREDICTED: uncharacterized protein LOC105642047 [Jatropha curcas]
9 Hb_000088_180 0.0921470684 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
10 Hb_003581_110 0.0944301638 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
11 Hb_000284_200 0.0967345422 - - -
12 Hb_000926_270 0.0977431347 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
13 Hb_001009_050 0.097949624 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
14 Hb_000392_280 0.0994031547 - - PREDICTED: pectinesterase 3 [Jatropha curcas]
15 Hb_001623_580 0.0999035278 - - PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
16 Hb_009615_110 0.1013850817 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
17 Hb_007534_040 0.1014211837 - - PREDICTED: uncharacterized protein LOC105635538 [Jatropha curcas]
18 Hb_000322_170 0.1045379129 - - PREDICTED: nucleosome assembly protein 1;3 [Jatropha curcas]
19 Hb_000270_450 0.1045491844 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
20 Hb_002405_020 0.1052321232 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001016_060 Hb_001016_060 Hb_006173_020 Hb_006173_020 Hb_001016_060--Hb_006173_020 Hb_002149_040 Hb_002149_040 Hb_001016_060--Hb_002149_040 Hb_003605_070 Hb_003605_070 Hb_001016_060--Hb_003605_070 Hb_000692_260 Hb_000692_260 Hb_001016_060--Hb_000692_260 Hb_005016_030 Hb_005016_030 Hb_001016_060--Hb_005016_030 Hb_000363_340 Hb_000363_340 Hb_001016_060--Hb_000363_340 Hb_006173_020--Hb_005016_030 Hb_009615_110 Hb_009615_110 Hb_006173_020--Hb_009615_110 Hb_019871_020 Hb_019871_020 Hb_006173_020--Hb_019871_020 Hb_000320_440 Hb_000320_440 Hb_006173_020--Hb_000320_440 Hb_000270_450 Hb_000270_450 Hb_006173_020--Hb_000270_450 Hb_002149_040--Hb_005016_030 Hb_002405_020 Hb_002405_020 Hb_002149_040--Hb_002405_020 Hb_001776_080 Hb_001776_080 Hb_002149_040--Hb_001776_080 Hb_000926_270 Hb_000926_270 Hb_002149_040--Hb_000926_270 Hb_002149_040--Hb_006173_020 Hb_005288_160 Hb_005288_160 Hb_003605_070--Hb_005288_160 Hb_000209_090 Hb_000209_090 Hb_003605_070--Hb_000209_090 Hb_001623_580 Hb_001623_580 Hb_003605_070--Hb_001623_580 Hb_002276_190 Hb_002276_190 Hb_003605_070--Hb_002276_190 Hb_000847_070 Hb_000847_070 Hb_003605_070--Hb_000847_070 Hb_000692_260--Hb_000926_270 Hb_000692_260--Hb_003605_070 Hb_000284_200 Hb_000284_200 Hb_000692_260--Hb_000284_200 Hb_000300_540 Hb_000300_540 Hb_000692_260--Hb_000300_540 Hb_007786_010 Hb_007786_010 Hb_000692_260--Hb_007786_010 Hb_001178_060 Hb_001178_060 Hb_005016_030--Hb_001178_060 Hb_000322_170 Hb_000322_170 Hb_005016_030--Hb_000322_170 Hb_005016_030--Hb_000320_440 Hb_000392_280 Hb_000392_280 Hb_000363_340--Hb_000392_280 Hb_012977_010 Hb_012977_010 Hb_000363_340--Hb_012977_010 Hb_005725_070 Hb_005725_070 Hb_000363_340--Hb_005725_070 Hb_001498_030 Hb_001498_030 Hb_000363_340--Hb_001498_030 Hb_000363_340--Hb_000300_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
112.239 29.8511 12.7005 7.94542 128.042 116.031
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.6237 49.919 31.4131 16.524 5.40294

CAGE analysis