Hb_001016_080

Information

Type -
Description -
Location Contig1016: 94688-99439
Sequence    

Annotation

kegg
ID rcu:RCOM_0572780
description ccaat-binding transcription factor, putative
nr
ID KCW53171.1
description hypothetical protein EUGRSUZ_J02452 [Eucalyptus grandis]
swissprot
ID Q9FI00
description MLO-like protein 11 OS=Arabidopsis thaliana GN=MLO11 PE=2 SV=1
trembl
ID M0ZVS4
description MLO-like protein OS=Solanum tuberosum GN=PGSC0003DMG400003574 PE=3 SV=1
Gene Ontology
ID GO:0016020
description mlo-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001016_080 0.0 - - hypothetical protein EUGRSUZ_J02452 [Eucalyptus grandis]
2 Hb_000768_140 0.1583666345 transcription factor TF Family: SWI/SNF-BAF60b tRNA (guanine-n(7)-)-methyltransferase, putative [Ricinus communis]
3 Hb_000291_270 0.1599906266 - - hypothetical protein JCGZ_12006 [Jatropha curcas]
4 Hb_002900_130 0.1701664448 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
5 Hb_020805_060 0.1776205917 - - PREDICTED: protein S-acyltransferase 21 [Jatropha curcas]
6 Hb_000483_090 0.1802101005 - - -
7 Hb_154141_030 0.1820008849 - - PREDICTED: histone H2AX [Populus euphratica]
8 Hb_000002_260 0.1827606336 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003057_020 0.1898447772 - - 40S ribosomal protein S23, putative [Ricinus communis]
10 Hb_005054_040 0.1932955066 - - PREDICTED: 60S ribosomal protein L35a-1 [Gossypium raimondii]
11 Hb_003398_020 0.2016416723 - - PREDICTED: uncharacterized protein LOC105647439 [Jatropha curcas]
12 Hb_000011_300 0.2033132359 - - PREDICTED: proteasome subunit alpha type-5 isoform X1 [Gossypium raimondii]
13 Hb_003540_200 0.206276825 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
14 Hb_003376_380 0.2065136188 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Jatropha curcas]
15 Hb_000239_110 0.2080149458 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
16 Hb_033376_010 0.2099912284 - - hypothetical protein POPTR_0008s02960g [Populus trichocarpa]
17 Hb_002217_460 0.2100089445 - - PREDICTED: transcription factor bHLH147-like [Jatropha curcas]
18 Hb_005321_010 0.2137150412 - - PREDICTED: uncharacterized protein LOC105644542 [Jatropha curcas]
19 Hb_000768_130 0.2137237502 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
20 Hb_007313_080 0.2167791047 - - hypothetical protein CICLE_v10002804mg [Citrus clementina]

Gene co-expression network

sample Hb_001016_080 Hb_001016_080 Hb_000768_140 Hb_000768_140 Hb_001016_080--Hb_000768_140 Hb_000291_270 Hb_000291_270 Hb_001016_080--Hb_000291_270 Hb_002900_130 Hb_002900_130 Hb_001016_080--Hb_002900_130 Hb_020805_060 Hb_020805_060 Hb_001016_080--Hb_020805_060 Hb_000483_090 Hb_000483_090 Hb_001016_080--Hb_000483_090 Hb_154141_030 Hb_154141_030 Hb_001016_080--Hb_154141_030 Hb_000768_140--Hb_020805_060 Hb_001164_030 Hb_001164_030 Hb_000768_140--Hb_001164_030 Hb_002243_060 Hb_002243_060 Hb_000768_140--Hb_002243_060 Hb_000189_540 Hb_000189_540 Hb_000768_140--Hb_000189_540 Hb_000768_140--Hb_000291_270 Hb_003540_200 Hb_003540_200 Hb_000291_270--Hb_003540_200 Hb_000291_270--Hb_154141_030 Hb_000291_270--Hb_000483_090 Hb_003020_330 Hb_003020_330 Hb_000291_270--Hb_003020_330 Hb_025645_030 Hb_025645_030 Hb_000291_270--Hb_025645_030 Hb_002900_130--Hb_154141_030 Hb_000768_130 Hb_000768_130 Hb_002900_130--Hb_000768_130 Hb_007313_080 Hb_007313_080 Hb_002900_130--Hb_007313_080 Hb_001635_130 Hb_001635_130 Hb_002900_130--Hb_001635_130 Hb_002900_130--Hb_003020_330 Hb_000739_140 Hb_000739_140 Hb_002900_130--Hb_000739_140 Hb_020805_060--Hb_001164_030 Hb_000011_300 Hb_000011_300 Hb_020805_060--Hb_000011_300 Hb_020805_060--Hb_000189_540 Hb_170426_010 Hb_170426_010 Hb_020805_060--Hb_170426_010 Hb_004787_040 Hb_004787_040 Hb_020805_060--Hb_004787_040 Hb_004100_090 Hb_004100_090 Hb_000483_090--Hb_004100_090 Hb_003007_010 Hb_003007_010 Hb_000483_090--Hb_003007_010 Hb_000483_090--Hb_003540_200 Hb_000483_090--Hb_020805_060 Hb_000483_090--Hb_001164_030 Hb_154141_030--Hb_000768_130 Hb_154141_030--Hb_003020_330 Hb_154141_030--Hb_007313_080 Hb_002811_090 Hb_002811_090 Hb_154141_030--Hb_002811_090 Hb_002838_030 Hb_002838_030 Hb_154141_030--Hb_002838_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.117337 0.068369 0.251815 1.37918 0.036651 0.0628487
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.715472 3.51729 0.32573 0.268134 0.362232

CAGE analysis