Hb_001016_110

Information

Type desease resistance
Description Gene Name: Lectin_legB
Location Contig1016: 138189-146273
Sequence    

Annotation

kegg
ID pop:POPTR_0004s20690g
description hypothetical protein
nr
ID XP_006384740.1
description hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID U5GML6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s20690g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001016_110 0.0 desease resistance Gene Name: Lectin_legB hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
2 Hb_004705_140 0.1375991099 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105647306 [Jatropha curcas]
3 Hb_000009_570 0.1528431882 - - PREDICTED: cytochrome P450 CYP82D47-like [Populus euphratica]
4 Hb_000016_100 0.156173771 transcription factor TF Family: TCP PREDICTED: transcription factor TCP19 [Jatropha curcas]
5 Hb_009838_050 0.1628793721 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000227_060 0.1671774291 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
7 Hb_001514_130 0.1769898328 - - hypothetical protein JCGZ_16073 [Jatropha curcas]
8 Hb_013394_080 0.1794178908 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D isoform X2 [Jatropha curcas]
9 Hb_000390_150 0.1797566092 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105632469 [Jatropha curcas]
10 Hb_002400_400 0.1817856323 - - PREDICTED: topless-related protein 1-like isoform X3 [Jatropha curcas]
11 Hb_002713_010 0.1823585694 - - multidrug resistance protein 1, 2, putative [Ricinus communis]
12 Hb_000575_120 0.1844798566 - - hypothetical protein POPTR_0011s02060g [Populus trichocarpa]
13 Hb_000130_040 0.1846586343 - - PREDICTED: dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
14 Hb_002701_040 0.1866597389 - - PREDICTED: auxin transport protein BIG [Jatropha curcas]
15 Hb_077562_030 0.1867605092 - - PREDICTED: cytochrome P450 4X1-like isoform X1 [Jatropha curcas]
16 Hb_010487_020 0.1873845693 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
17 Hb_000252_020 0.1887466112 - - PREDICTED: alpha-glucan water dikinase, chloroplastic [Jatropha curcas]
18 Hb_009701_010 0.1909082157 - - PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
19 Hb_000200_280 0.1927952769 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
20 Hb_012799_120 0.1943655546 - - PREDICTED: DNA mismatch repair protein MSH3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001016_110 Hb_001016_110 Hb_004705_140 Hb_004705_140 Hb_001016_110--Hb_004705_140 Hb_000009_570 Hb_000009_570 Hb_001016_110--Hb_000009_570 Hb_000016_100 Hb_000016_100 Hb_001016_110--Hb_000016_100 Hb_009838_050 Hb_009838_050 Hb_001016_110--Hb_009838_050 Hb_000227_060 Hb_000227_060 Hb_001016_110--Hb_000227_060 Hb_001514_130 Hb_001514_130 Hb_001016_110--Hb_001514_130 Hb_009701_010 Hb_009701_010 Hb_004705_140--Hb_009701_010 Hb_003994_060 Hb_003994_060 Hb_004705_140--Hb_003994_060 Hb_003609_020 Hb_003609_020 Hb_004705_140--Hb_003609_020 Hb_073562_010 Hb_073562_010 Hb_004705_140--Hb_073562_010 Hb_002435_110 Hb_002435_110 Hb_004705_140--Hb_002435_110 Hb_003929_130 Hb_003929_130 Hb_004705_140--Hb_003929_130 Hb_000011_230 Hb_000011_230 Hb_000009_570--Hb_000011_230 Hb_004954_070 Hb_004954_070 Hb_000009_570--Hb_004954_070 Hb_000575_120 Hb_000575_120 Hb_000009_570--Hb_000575_120 Hb_000453_060 Hb_000453_060 Hb_000009_570--Hb_000453_060 Hb_000296_070 Hb_000296_070 Hb_000009_570--Hb_000296_070 Hb_004602_040 Hb_004602_040 Hb_000009_570--Hb_004602_040 Hb_004032_270 Hb_004032_270 Hb_000016_100--Hb_004032_270 Hb_000016_100--Hb_009838_050 Hb_006582_020 Hb_006582_020 Hb_000016_100--Hb_006582_020 Hb_000016_100--Hb_002435_110 Hb_000025_340 Hb_000025_340 Hb_000016_100--Hb_000025_340 Hb_000390_150 Hb_000390_150 Hb_000016_100--Hb_000390_150 Hb_009838_050--Hb_004032_270 Hb_076693_020 Hb_076693_020 Hb_009838_050--Hb_076693_020 Hb_012807_050 Hb_012807_050 Hb_009838_050--Hb_012807_050 Hb_001318_030 Hb_001318_030 Hb_009838_050--Hb_001318_030 Hb_045793_010 Hb_045793_010 Hb_009838_050--Hb_045793_010 Hb_009838_050--Hb_002435_110 Hb_000905_170 Hb_000905_170 Hb_000227_060--Hb_000905_170 Hb_000200_280 Hb_000200_280 Hb_000227_060--Hb_000200_280 Hb_000390_100 Hb_000390_100 Hb_000227_060--Hb_000390_100 Hb_049436_010 Hb_049436_010 Hb_000227_060--Hb_049436_010 Hb_000227_060--Hb_001514_130 Hb_000856_180 Hb_000856_180 Hb_000227_060--Hb_000856_180 Hb_001514_130--Hb_000200_280 Hb_001575_010 Hb_001575_010 Hb_001514_130--Hb_001575_010 Hb_005214_090 Hb_005214_090 Hb_001514_130--Hb_005214_090 Hb_004218_030 Hb_004218_030 Hb_001514_130--Hb_004218_030 Hb_000684_290 Hb_000684_290 Hb_001514_130--Hb_000684_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0537341 0.241674 0.0105018 0.0165597 0.0970519 0.12806
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0774449 0.158469 0.0822182 0.190487 0.0655474

CAGE analysis