Hb_001016_120

Information

Type -
Description -
Location Contig1016: 150159-159373
Sequence    

Annotation

kegg
ID pop:POPTR_0005s11300g
description hypothetical protein
nr
ID XP_012088505.1
description PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
swissprot
ID U3KRF2
description 3-dehydroquinate synthase, chloroplastic OS=Actinidia chinensis GN=DHQS PE=1 SV=2
trembl
ID A0A067JJD2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25385 PE=3 SV=1
Gene Ontology
ID GO:0005768
description 3-dehydroquinate synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00766: 150471-152517 , PASA_asmbl_00767: 152991-155931
cDNA
(Sanger)
(ID:Location)		 010_B16.ab1: 150472-151956 , 041_K02.ab1: 152993-153900 , 053_H11.ab1: 152993-154015

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001016_120 0.0 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
2 Hb_000116_270 0.0539293371 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
3 Hb_149985_010 0.054820028 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
4 Hb_084646_010 0.0604914192 - - hypothetical protein CICLE_v10031746mg [Citrus clementina]
5 Hb_002481_080 0.0654431164 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
6 Hb_028227_070 0.0677500349 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
7 Hb_005054_110 0.0689366331 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
8 Hb_000049_210 0.0695869992 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
9 Hb_004109_220 0.070577399 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
10 Hb_002169_040 0.071115866 - - unknown [Populus trichocarpa]
11 Hb_000095_080 0.0728555269 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Jatropha curcas]
12 Hb_001500_140 0.0729680422 - - pelota, putative [Ricinus communis]
13 Hb_000072_320 0.0736914686 - - PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Jatropha curcas]
14 Hb_000381_120 0.0738832413 - - PREDICTED: uncharacterized protein LOC105648175 [Jatropha curcas]
15 Hb_023001_040 0.0743678463 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
16 Hb_000200_020 0.0745360418 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
17 Hb_001584_120 0.074680697 - - PREDICTED: probable Xaa-Pro aminopeptidase 3 [Jatropha curcas]
18 Hb_008841_020 0.0748854407 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
19 Hb_000260_350 0.0753860125 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000081_160 0.0756972065 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]

Gene co-expression network

sample Hb_001016_120 Hb_001016_120 Hb_000116_270 Hb_000116_270 Hb_001016_120--Hb_000116_270 Hb_149985_010 Hb_149985_010 Hb_001016_120--Hb_149985_010 Hb_084646_010 Hb_084646_010 Hb_001016_120--Hb_084646_010 Hb_002481_080 Hb_002481_080 Hb_001016_120--Hb_002481_080 Hb_028227_070 Hb_028227_070 Hb_001016_120--Hb_028227_070 Hb_005054_110 Hb_005054_110 Hb_001016_120--Hb_005054_110 Hb_001159_130 Hb_001159_130 Hb_000116_270--Hb_001159_130 Hb_000200_020 Hb_000200_020 Hb_000116_270--Hb_000200_020 Hb_000116_270--Hb_084646_010 Hb_006478_020 Hb_006478_020 Hb_000116_270--Hb_006478_020 Hb_000477_060 Hb_000477_060 Hb_000116_270--Hb_000477_060 Hb_004109_220 Hb_004109_220 Hb_149985_010--Hb_004109_220 Hb_000574_450 Hb_000574_450 Hb_149985_010--Hb_000574_450 Hb_000359_060 Hb_000359_060 Hb_149985_010--Hb_000359_060 Hb_149985_010--Hb_005054_110 Hb_000049_210 Hb_000049_210 Hb_149985_010--Hb_000049_210 Hb_155159_020 Hb_155159_020 Hb_084646_010--Hb_155159_020 Hb_000787_020 Hb_000787_020 Hb_084646_010--Hb_000787_020 Hb_027380_130 Hb_027380_130 Hb_084646_010--Hb_027380_130 Hb_084646_010--Hb_001159_130 Hb_002481_080--Hb_028227_070 Hb_000028_180 Hb_000028_180 Hb_002481_080--Hb_000028_180 Hb_011485_070 Hb_011485_070 Hb_002481_080--Hb_011485_070 Hb_000645_090 Hb_000645_090 Hb_002481_080--Hb_000645_090 Hb_002000_080 Hb_002000_080 Hb_002481_080--Hb_002000_080 Hb_000504_070 Hb_000504_070 Hb_028227_070--Hb_000504_070 Hb_010964_040 Hb_010964_040 Hb_028227_070--Hb_010964_040 Hb_001584_120 Hb_001584_120 Hb_028227_070--Hb_001584_120 Hb_028227_070--Hb_155159_020 Hb_011386_010 Hb_011386_010 Hb_005054_110--Hb_011386_010 Hb_005054_110--Hb_000049_210 Hb_000260_350 Hb_000260_350 Hb_005054_110--Hb_000260_350 Hb_019863_070 Hb_019863_070 Hb_005054_110--Hb_019863_070 Hb_001304_110 Hb_001304_110 Hb_005054_110--Hb_001304_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.4639 26.5292 30.5611 50.0068 25.1663 36.8928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.2072 53.1724 49.5219 54.6653 36.4328

CAGE analysis