Hb_001016_150

Information

Type -
Description -
Location Contig1016: 184099-187797
Sequence    

Annotation

kegg
ID egr:104419642
description rac-like GTP-binding protein RHO1
nr
ID AGL44364.1
description Rop1 [Hevea brasiliensis]
swissprot
ID Q38902
description Rac-like GTP-binding protein ARAC1 OS=Arabidopsis thaliana GN=ARAC1 PE=1 SV=1
trembl
ID T1RLN5
description Rop1 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005634
description rac-like gtp-binding protein arac1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00770: 184101-187795
cDNA
(Sanger)
(ID:Location)		 002_G20.ab1: 184192-187024 , 021_K13.ab1: 184101-184641 , 049_I03.ab1: 184155-184641

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001016_150 0.0 - - Rop1 [Hevea brasiliensis]
2 Hb_124953_020 0.053270325 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
3 Hb_001863_430 0.065499543 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
4 Hb_002078_140 0.066462921 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
5 Hb_001341_150 0.071950929 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
6 Hb_002811_170 0.0733160427 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
7 Hb_000506_070 0.0738925325 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
8 Hb_003018_020 0.0766199909 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]
9 Hb_000836_470 0.0813980305 - - -
10 Hb_001728_030 0.083033225 - - 60S ribosomal protein L15 [Populus trichocarpa]
11 Hb_002171_060 0.0841955862 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000327_230 0.0844851056 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
13 Hb_014720_040 0.0846892756 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
14 Hb_000236_390 0.0879207622 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
15 Hb_000359_150 0.0886668764 - - PREDICTED: protein Mpv17-like isoform X1 [Jatropha curcas]
16 Hb_000005_090 0.0890653242 - - hypothetical protein CICLE_v10029644mg [Citrus clementina]
17 Hb_000260_550 0.0908515733 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
18 Hb_000261_160 0.0909929572 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X2 [Jatropha curcas]
19 Hb_001931_010 0.0910524473 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
20 Hb_003018_010 0.0918038913 - - PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001016_150 Hb_001016_150 Hb_124953_020 Hb_124953_020 Hb_001016_150--Hb_124953_020 Hb_001863_430 Hb_001863_430 Hb_001016_150--Hb_001863_430 Hb_002078_140 Hb_002078_140 Hb_001016_150--Hb_002078_140 Hb_001341_150 Hb_001341_150 Hb_001016_150--Hb_001341_150 Hb_002811_170 Hb_002811_170 Hb_001016_150--Hb_002811_170 Hb_000506_070 Hb_000506_070 Hb_001016_150--Hb_000506_070 Hb_124953_020--Hb_002078_140 Hb_005365_030 Hb_005365_030 Hb_124953_020--Hb_005365_030 Hb_004800_060 Hb_004800_060 Hb_124953_020--Hb_004800_060 Hb_124953_020--Hb_001863_430 Hb_002192_010 Hb_002192_010 Hb_124953_020--Hb_002192_010 Hb_001863_430--Hb_000506_070 Hb_001863_430--Hb_002078_140 Hb_001863_430--Hb_002811_170 Hb_000327_230 Hb_000327_230 Hb_001863_430--Hb_000327_230 Hb_001691_140 Hb_001691_140 Hb_001863_430--Hb_001691_140 Hb_002078_140--Hb_001691_140 Hb_002078_140--Hb_001341_150 Hb_000136_260 Hb_000136_260 Hb_002078_140--Hb_000136_260 Hb_001931_010 Hb_001931_010 Hb_001341_150--Hb_001931_010 Hb_010098_050 Hb_010098_050 Hb_001341_150--Hb_010098_050 Hb_006615_240 Hb_006615_240 Hb_001341_150--Hb_006615_240 Hb_000457_180 Hb_000457_180 Hb_001341_150--Hb_000457_180 Hb_028396_010 Hb_028396_010 Hb_001341_150--Hb_028396_010 Hb_007747_050 Hb_007747_050 Hb_002811_170--Hb_007747_050 Hb_000836_470 Hb_000836_470 Hb_002811_170--Hb_000836_470 Hb_002811_170--Hb_001931_010 Hb_001728_030 Hb_001728_030 Hb_002811_170--Hb_001728_030 Hb_000735_040 Hb_000735_040 Hb_000506_070--Hb_000735_040 Hb_000062_650 Hb_000062_650 Hb_000506_070--Hb_000062_650 Hb_003018_020 Hb_003018_020 Hb_000506_070--Hb_003018_020 Hb_003226_100 Hb_003226_100 Hb_000506_070--Hb_003226_100 Hb_001141_140 Hb_001141_140 Hb_000506_070--Hb_001141_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2866 12.4068 27.5398 25.8427 15.0582 18.5114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.8042 57.8637 15.9408 17.6549 10.1339

CAGE analysis