Hb_001017_040

Information

Type -
Description -
Location Contig1017: 48907-58962
Sequence    

Annotation

kegg
ID tcc:TCM_010631
description Nucleoporin GLE1, putative isoform 1
nr
ID XP_011034027.1
description PREDICTED: protein GLE1 isoform X2 [Populus euphratica]
swissprot
ID Q0WPZ7
description Protein GLE1 OS=Arabidopsis thaliana GN=GLE1 PE=1 SV=1
trembl
ID A0A067K349
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17828 PE=4 SV=1
Gene Ontology
ID GO:0005643
description protein gle1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00781: 48970-56451
cDNA
(Sanger)
(ID:Location)		 020_O24.ab1: 54861-56451

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001017_040 0.0 - - PREDICTED: protein GLE1 isoform X2 [Populus euphratica]
2 Hb_000184_110 0.0556208636 - - hypothetical protein F383_18769 [Gossypium arboreum]
3 Hb_000120_800 0.0737269071 - - PREDICTED: rab proteins geranylgeranyltransferase component A [Jatropha curcas]
4 Hb_005662_030 0.0757124059 - - protein with unknown function [Ricinus communis]
5 Hb_000179_020 0.077236533 - - amidase, putative [Ricinus communis]
6 Hb_005396_130 0.0776467416 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
7 Hb_002039_010 0.0792064684 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
8 Hb_005754_060 0.0797821813 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000030_010 0.0798560627 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
10 Hb_000481_040 0.0802860211 - - developmentally regulated GTP-binding protein, putative [Ricinus communis]
11 Hb_000661_050 0.0809776837 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
12 Hb_004724_200 0.0811098108 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
13 Hb_002030_030 0.0814440071 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
14 Hb_004204_020 0.0821522722 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105640780 [Jatropha curcas]
15 Hb_009111_050 0.0821636621 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
16 Hb_001862_190 0.0829720914 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
17 Hb_001454_210 0.0830884553 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
18 Hb_000190_140 0.083246006 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
19 Hb_000120_950 0.0838962148 - - PREDICTED: protein GRIP [Jatropha curcas]
20 Hb_011794_060 0.0839445928 - - PREDICTED: beta-amylase 2, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001017_040 Hb_001017_040 Hb_000184_110 Hb_000184_110 Hb_001017_040--Hb_000184_110 Hb_000120_800 Hb_000120_800 Hb_001017_040--Hb_000120_800 Hb_005662_030 Hb_005662_030 Hb_001017_040--Hb_005662_030 Hb_000179_020 Hb_000179_020 Hb_001017_040--Hb_000179_020 Hb_005396_130 Hb_005396_130 Hb_001017_040--Hb_005396_130 Hb_002039_010 Hb_002039_010 Hb_001017_040--Hb_002039_010 Hb_000184_110--Hb_005396_130 Hb_004452_100 Hb_004452_100 Hb_000184_110--Hb_004452_100 Hb_000729_050 Hb_000729_050 Hb_000184_110--Hb_000729_050 Hb_000184_110--Hb_005662_030 Hb_108216_040 Hb_108216_040 Hb_000184_110--Hb_108216_040 Hb_001840_080 Hb_001840_080 Hb_000120_800--Hb_001840_080 Hb_005306_110 Hb_005306_110 Hb_000120_800--Hb_005306_110 Hb_000134_090 Hb_000134_090 Hb_000120_800--Hb_000134_090 Hb_000009_170 Hb_000009_170 Hb_000120_800--Hb_000009_170 Hb_022137_060 Hb_022137_060 Hb_000120_800--Hb_022137_060 Hb_001862_190 Hb_001862_190 Hb_005662_030--Hb_001862_190 Hb_000620_010 Hb_000620_010 Hb_005662_030--Hb_000620_010 Hb_000028_610 Hb_000028_610 Hb_005662_030--Hb_000028_610 Hb_006065_020 Hb_006065_020 Hb_005662_030--Hb_006065_020 Hb_011794_060 Hb_011794_060 Hb_000179_020--Hb_011794_060 Hb_002174_060 Hb_002174_060 Hb_000179_020--Hb_002174_060 Hb_002079_010 Hb_002079_010 Hb_000179_020--Hb_002079_010 Hb_000889_020 Hb_000889_020 Hb_000179_020--Hb_000889_020 Hb_001866_110 Hb_001866_110 Hb_000179_020--Hb_001866_110 Hb_004195_280 Hb_004195_280 Hb_000179_020--Hb_004195_280 Hb_001322_190 Hb_001322_190 Hb_005396_130--Hb_001322_190 Hb_005396_130--Hb_004452_100 Hb_002798_040 Hb_002798_040 Hb_005396_130--Hb_002798_040 Hb_000100_070 Hb_000100_070 Hb_005396_130--Hb_000100_070 Hb_002890_340 Hb_002890_340 Hb_002039_010--Hb_002890_340 Hb_004204_020 Hb_004204_020 Hb_002039_010--Hb_004204_020 Hb_002039_010--Hb_004452_100 Hb_000152_820 Hb_000152_820 Hb_002039_010--Hb_000152_820 Hb_000184_130 Hb_000184_130 Hb_002039_010--Hb_000184_130 Hb_015306_020 Hb_015306_020 Hb_002039_010--Hb_015306_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.7697 13.5879 11.8356 9.72914 39.6791 52.2083
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.3713 21.899 41.7062 18.8445 16.9688

CAGE analysis