Hb_001017_060

Information

Type -
Description -
Location Contig1017: 70441-76642
Sequence    

Annotation

kegg
ID rcu:RCOM_0466040
description Auxin-induced protein 5NG4, putative
nr
ID XP_002528467.1
description Auxin-induced protein 5NG4, putative [Ricinus communis]
swissprot
ID O80638
description WAT1-related protein At2g39510 OS=Arabidopsis thaliana GN=At2g39510 PE=2 SV=1
trembl
ID B9SR48
description Auxin-induced protein 5NG4, putative OS=Ricinus communis GN=RCOM_0466040 PE=4 SV=1
Gene Ontology
ID GO:0016021
description wat1-related protein at2g39510-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00783: 69363-71652 , PASA_asmbl_00784: 71693-79146
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001017_060 0.0 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
2 Hb_008221_110 0.1351947234 - - PREDICTED: diphthamide biosynthesis protein 4 [Jatropha curcas]
3 Hb_175976_010 0.1355777684 - - -
4 Hb_007534_020 0.1388251999 - - -
5 Hb_000258_030 0.1597448058 - - -
6 Hb_014834_040 0.1629129268 - - hypothetical protein JCGZ_03409 [Jatropha curcas]
7 Hb_011644_010 0.1662768667 - - PREDICTED: probable choline-phosphate cytidylyltransferase [Elaeis guineensis]
8 Hb_000097_010 0.1694876348 - - -
9 Hb_006995_040 0.1714743477 - - PREDICTED: LOW QUALITY PROTEIN: 14 kDa zinc-binding protein-like [Pyrus x bretschneideri]
10 Hb_001571_110 0.1808514129 - - PREDICTED: 60S ribosomal protein L44-like [Gossypium raimondii]
11 Hb_010368_030 0.1850235324 - - BnaA07g35570D [Brassica napus]
12 Hb_042710_010 0.1864752334 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
13 Hb_001610_130 0.1872302025 - - 40S ribosomal protein S30 [Medicago truncatula]
14 Hb_000994_110 0.1893620581 - - conserved hypothetical protein [Ricinus communis]
15 Hb_014834_140 0.193329654 - - Uncharacterized protein TCM_015942 [Theobroma cacao]
16 Hb_029142_070 0.1949076548 - - -
17 Hb_009346_040 0.1967784018 - - -
18 Hb_001296_030 0.1985826555 - - PREDICTED: uncharacterized protein LOC105638276 [Jatropha curcas]
19 Hb_002784_070 0.2013535545 - - BnaUnng01470D [Brassica napus]
20 Hb_000127_090 0.2013765304 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001017_060 Hb_001017_060 Hb_008221_110 Hb_008221_110 Hb_001017_060--Hb_008221_110 Hb_175976_010 Hb_175976_010 Hb_001017_060--Hb_175976_010 Hb_007534_020 Hb_007534_020 Hb_001017_060--Hb_007534_020 Hb_000258_030 Hb_000258_030 Hb_001017_060--Hb_000258_030 Hb_014834_040 Hb_014834_040 Hb_001017_060--Hb_014834_040 Hb_011644_010 Hb_011644_010 Hb_001017_060--Hb_011644_010 Hb_008221_110--Hb_175976_010 Hb_000127_090 Hb_000127_090 Hb_008221_110--Hb_000127_090 Hb_001310_070 Hb_001310_070 Hb_008221_110--Hb_001310_070 Hb_010368_030 Hb_010368_030 Hb_008221_110--Hb_010368_030 Hb_008221_110--Hb_007534_020 Hb_175976_010--Hb_010368_030 Hb_175976_010--Hb_007534_020 Hb_000120_190 Hb_000120_190 Hb_175976_010--Hb_000120_190 Hb_175976_010--Hb_000127_090 Hb_007534_020--Hb_010368_030 Hb_007534_020--Hb_000127_090 Hb_006065_040 Hb_006065_040 Hb_007534_020--Hb_006065_040 Hb_000258_030--Hb_175976_010 Hb_000258_030--Hb_000127_090 Hb_006995_040 Hb_006995_040 Hb_000258_030--Hb_006995_040 Hb_002284_050 Hb_002284_050 Hb_000258_030--Hb_002284_050 Hb_000258_030--Hb_008221_110 Hb_001571_110 Hb_001571_110 Hb_014834_040--Hb_001571_110 Hb_042710_010 Hb_042710_010 Hb_014834_040--Hb_042710_010 Hb_098852_010 Hb_098852_010 Hb_014834_040--Hb_098852_010 Hb_132180_010 Hb_132180_010 Hb_014834_040--Hb_132180_010 Hb_020035_020 Hb_020035_020 Hb_014834_040--Hb_020035_020 Hb_014834_040--Hb_006995_040 Hb_000097_010 Hb_000097_010 Hb_011644_010--Hb_000097_010 Hb_135940_010 Hb_135940_010 Hb_011644_010--Hb_135940_010 Hb_029142_070 Hb_029142_070 Hb_011644_010--Hb_029142_070 Hb_000656_340 Hb_000656_340 Hb_011644_010--Hb_000656_340 Hb_011644_010--Hb_014834_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.258239 0 0 2.25077 0.423954 3.64602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.45009 3.84905 0.511325 0.757802 0.280661

CAGE analysis