Hb_001017_090

Information

Type -
Description -
Location Contig1017: 115736-118122
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00786: 116103-117731 , PASA_asmbl_00791: 115884-116980 , PASA_asmbl_00793: 115842-116624 , PASA_asmbl_00795: 116318-116438
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001017_090 0.0 - - -
2 Hb_002506_010 0.0752865651 - - choline transporter-related family protein [Populus trichocarpa]
3 Hb_001476_100 0.0789595174 - - conserved hypothetical protein [Ricinus communis]
4 Hb_009510_030 0.0821462256 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
5 Hb_010931_100 0.0917769772 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
6 Hb_000264_190 0.0933643463 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
7 Hb_000258_430 0.0941748603 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
8 Hb_005488_100 0.0947325733 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
9 Hb_005245_090 0.096462482 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
10 Hb_000387_080 0.0969028422 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
11 Hb_010174_120 0.0976430068 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1-like [Gossypium raimondii]
12 Hb_000771_140 0.1011599393 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
13 Hb_002067_160 0.1013197268 - - Protein MLO, putative [Ricinus communis]
14 Hb_000442_030 0.1024265712 - - conserved hypothetical protein [Ricinus communis]
15 Hb_026048_090 0.1025041563 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003404_030 0.1027037629 - - PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like isoform X1 [Jatropha curcas]
17 Hb_027751_020 0.1028830692 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
18 Hb_010174_130 0.1039992928 - - PREDICTED: regulator of G-protein signaling 1 [Jatropha curcas]
19 Hb_000057_060 0.1056419359 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
20 Hb_000085_340 0.106666065 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001017_090 Hb_001017_090 Hb_002506_010 Hb_002506_010 Hb_001017_090--Hb_002506_010 Hb_001476_100 Hb_001476_100 Hb_001017_090--Hb_001476_100 Hb_009510_030 Hb_009510_030 Hb_001017_090--Hb_009510_030 Hb_010931_100 Hb_010931_100 Hb_001017_090--Hb_010931_100 Hb_000264_190 Hb_000264_190 Hb_001017_090--Hb_000264_190 Hb_000258_430 Hb_000258_430 Hb_001017_090--Hb_000258_430 Hb_002506_010--Hb_009510_030 Hb_003404_030 Hb_003404_030 Hb_002506_010--Hb_003404_030 Hb_000057_060 Hb_000057_060 Hb_002506_010--Hb_000057_060 Hb_010174_130 Hb_010174_130 Hb_002506_010--Hb_010174_130 Hb_000387_080 Hb_000387_080 Hb_002506_010--Hb_000387_080 Hb_002067_160 Hb_002067_160 Hb_001476_100--Hb_002067_160 Hb_000696_110 Hb_000696_110 Hb_001476_100--Hb_000696_110 Hb_006602_020 Hb_006602_020 Hb_001476_100--Hb_006602_020 Hb_000700_090 Hb_000700_090 Hb_001476_100--Hb_000700_090 Hb_001476_100--Hb_000057_060 Hb_004126_010 Hb_004126_010 Hb_009510_030--Hb_004126_010 Hb_026048_090 Hb_026048_090 Hb_009510_030--Hb_026048_090 Hb_000771_140 Hb_000771_140 Hb_009510_030--Hb_000771_140 Hb_009510_030--Hb_000057_060 Hb_003001_030 Hb_003001_030 Hb_009510_030--Hb_003001_030 Hb_010931_100--Hb_000264_190 Hb_002609_260 Hb_002609_260 Hb_010931_100--Hb_002609_260 Hb_004545_150 Hb_004545_150 Hb_010931_100--Hb_004545_150 Hb_000563_540 Hb_000563_540 Hb_010931_100--Hb_000563_540 Hb_005488_100 Hb_005488_100 Hb_010931_100--Hb_005488_100 Hb_027751_020 Hb_027751_020 Hb_010931_100--Hb_027751_020 Hb_000264_190--Hb_002609_260 Hb_000264_190--Hb_000563_540 Hb_005730_020 Hb_005730_020 Hb_000264_190--Hb_005730_020 Hb_000264_190--Hb_009510_030 Hb_002890_220 Hb_002890_220 Hb_000264_190--Hb_002890_220 Hb_002450_050 Hb_002450_050 Hb_000258_430--Hb_002450_050 Hb_006551_010 Hb_006551_010 Hb_000258_430--Hb_006551_010 Hb_000028_470 Hb_000028_470 Hb_000258_430--Hb_000028_470 Hb_000258_430--Hb_010174_130 Hb_000258_430--Hb_003404_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
244.983 14.91 4.19569 36.9304 172.028 237.457
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
224.098 106.151 183.979 30.1566 6.61712

CAGE analysis