Hb_001017_100

Information

Type -
Description -
Location Contig1017: 133511-144705
Sequence    

Annotation

kegg
ID rcu:RCOM_1083470
description hypothetical protein
nr
ID XP_012085537.1
description PREDICTED: uncharacterized protein LOC105644705 [Jatropha curcas]
swissprot
ID Q9SS87
description Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana GN=SEOB PE=1 SV=1
trembl
ID A0A067JV97
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17861 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00787: 133527-144557 , PASA_asmbl_00788: 133578-144577 , PASA_asmbl_00789: 133591-144577 , PASA_asmbl_00790: 133527-136461 , PASA_asmbl_00792: 141781-142380
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001017_100 0.0 - - PREDICTED: uncharacterized protein LOC105644705 [Jatropha curcas]
2 Hb_005271_030 0.1024287452 - - copper-transporting atpase p-type, putative [Ricinus communis]
3 Hb_001146_070 0.1253956265 transcription factor TF Family: bHLH LMYC2 [Hevea brasiliensis]
4 Hb_002506_110 0.1423752238 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
5 Hb_000161_100 0.1498381584 - - Transducin/WD40 repeat-like superfamily protein isoform 2 [Theobroma cacao]
6 Hb_000018_160 0.1528777724 - - nitrate transporter, putative [Ricinus communis]
7 Hb_000441_230 0.1553457703 - - unnamed protein product [Coffea canephora]
8 Hb_003540_140 0.1566586645 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
9 Hb_029464_010 0.1602664134 - - PREDICTED: zeatin O-glucosyltransferase-like [Jatropha curcas]
10 Hb_000156_030 0.1609020954 - - conserved hypothetical protein [Ricinus communis]
11 Hb_156144_020 0.1623762915 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
12 Hb_000580_060 0.1628165467 - - PREDICTED: uncharacterized protein LOC105643127 [Jatropha curcas]
13 Hb_000329_540 0.1645813185 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
14 Hb_007158_030 0.1648312466 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_003226_170 0.1720115555 - - PREDICTED: poly [ADP-ribose] polymerase 2 isoform X1 [Jatropha curcas]
16 Hb_001268_230 0.1722183676 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
17 Hb_009193_130 0.1734672801 - - hypothetical protein RCOM_1620550 [Ricinus communis]
18 Hb_000175_530 0.1735956972 - - PREDICTED: uncharacterized protein LOC105136409 [Populus euphratica]
19 Hb_064201_010 0.1736369555 - - hypothetical protein RCOM_1685970 [Ricinus communis]
20 Hb_000211_080 0.177869994 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]

Gene co-expression network

sample Hb_001017_100 Hb_001017_100 Hb_005271_030 Hb_005271_030 Hb_001017_100--Hb_005271_030 Hb_001146_070 Hb_001146_070 Hb_001017_100--Hb_001146_070 Hb_002506_110 Hb_002506_110 Hb_001017_100--Hb_002506_110 Hb_000161_100 Hb_000161_100 Hb_001017_100--Hb_000161_100 Hb_000018_160 Hb_000018_160 Hb_001017_100--Hb_000018_160 Hb_000441_230 Hb_000441_230 Hb_001017_100--Hb_000441_230 Hb_029464_010 Hb_029464_010 Hb_005271_030--Hb_029464_010 Hb_009193_130 Hb_009193_130 Hb_005271_030--Hb_009193_130 Hb_005271_030--Hb_001146_070 Hb_007158_030 Hb_007158_030 Hb_005271_030--Hb_007158_030 Hb_005271_030--Hb_002506_110 Hb_000175_530 Hb_000175_530 Hb_001146_070--Hb_000175_530 Hb_001146_070--Hb_029464_010 Hb_064201_010 Hb_064201_010 Hb_001146_070--Hb_064201_010 Hb_001146_070--Hb_007158_030 Hb_000376_150 Hb_000376_150 Hb_002506_110--Hb_000376_150 Hb_002506_110--Hb_009193_130 Hb_098315_100 Hb_098315_100 Hb_002506_110--Hb_098315_100 Hb_000856_100 Hb_000856_100 Hb_002506_110--Hb_000856_100 Hb_002506_110--Hb_007158_030 Hb_000211_080 Hb_000211_080 Hb_000161_100--Hb_000211_080 Hb_000156_030 Hb_000156_030 Hb_000161_100--Hb_000156_030 Hb_003673_020 Hb_003673_020 Hb_000161_100--Hb_003673_020 Hb_000161_100--Hb_000018_160 Hb_000005_320 Hb_000005_320 Hb_000161_100--Hb_000005_320 Hb_031073_010 Hb_031073_010 Hb_000161_100--Hb_031073_010 Hb_000018_160--Hb_000211_080 Hb_035360_010 Hb_035360_010 Hb_000018_160--Hb_035360_010 Hb_005568_070 Hb_005568_070 Hb_000018_160--Hb_005568_070 Hb_000619_070 Hb_000619_070 Hb_000018_160--Hb_000619_070 Hb_000544_120 Hb_000544_120 Hb_000018_160--Hb_000544_120 Hb_000329_540 Hb_000329_540 Hb_000441_230--Hb_000329_540 Hb_003540_140 Hb_003540_140 Hb_000441_230--Hb_003540_140 Hb_000441_230--Hb_002506_110 Hb_003226_170 Hb_003226_170 Hb_000441_230--Hb_003226_170 Hb_000441_230--Hb_005271_030 Hb_000580_060 Hb_000580_060 Hb_000441_230--Hb_000580_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1169.8 61.5294 8.93592 74.9445 1758.46 1253.17
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
428.884 40.7566 106.464 14.5552 18.1719

CAGE analysis