Hb_001017_120

Information

Type -
Description -
Location Contig1017: 160712-168892
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001017_120 0.0 - - -
2 Hb_000331_320 0.2375617999 - - -
3 Hb_108884_010 0.2563194384 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Prunus mume]
4 Hb_001047_140 0.2570079511 - - -
5 Hb_004586_450 0.286940111 - - -
6 Hb_017436_010 0.2923515617 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_056768_010 0.2935614608 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Cicer arietinum]
8 Hb_000529_240 0.2977837604 - - -
9 Hb_070820_010 0.2984401117 - - hypothetical protein B456_008G232800 [Gossypium raimondii]
10 Hb_027913_020 0.3028382895 - - -
11 Hb_003209_030 0.304281897 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
12 Hb_000086_330 0.311092629 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]
13 Hb_005690_020 0.3129518751 - - hypothetical protein POPTR_0006s08200g [Populus trichocarpa]
14 Hb_012807_010 0.3169600238 - - -
15 Hb_004958_030 0.3191612861 - - PREDICTED: uncharacterized protein LOC104904188 [Beta vulgaris subsp. vulgaris]
16 Hb_008667_050 0.3192259614 - - PREDICTED: serine/threonine-protein kinase HT1-like [Malus domestica]
17 Hb_002301_240 0.3209751838 - - auxin-repressed protein-like protein ARP1 [Manihot esculenta]
18 Hb_005009_020 0.3246118551 - - -
19 Hb_039548_010 0.3253034331 - - hypothetical protein RCOM_1685970 [Ricinus communis]
20 Hb_005946_030 0.3275576601 - - ATP-binding cassette transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_001017_120 Hb_001017_120 Hb_000331_320 Hb_000331_320 Hb_001017_120--Hb_000331_320 Hb_108884_010 Hb_108884_010 Hb_001017_120--Hb_108884_010 Hb_001047_140 Hb_001047_140 Hb_001017_120--Hb_001047_140 Hb_004586_450 Hb_004586_450 Hb_001017_120--Hb_004586_450 Hb_017436_010 Hb_017436_010 Hb_001017_120--Hb_017436_010 Hb_056768_010 Hb_056768_010 Hb_001017_120--Hb_056768_010 Hb_008667_050 Hb_008667_050 Hb_000331_320--Hb_008667_050 Hb_003209_030 Hb_003209_030 Hb_000331_320--Hb_003209_030 Hb_000331_320--Hb_001047_140 Hb_005690_020 Hb_005690_020 Hb_000331_320--Hb_005690_020 Hb_000529_240 Hb_000529_240 Hb_000331_320--Hb_000529_240 Hb_000453_210 Hb_000453_210 Hb_000331_320--Hb_000453_210 Hb_027913_020 Hb_027913_020 Hb_108884_010--Hb_027913_020 Hb_021576_060 Hb_021576_060 Hb_108884_010--Hb_021576_060 Hb_002234_190 Hb_002234_190 Hb_108884_010--Hb_002234_190 Hb_108884_010--Hb_004586_450 Hb_137461_010 Hb_137461_010 Hb_108884_010--Hb_137461_010 Hb_001864_030 Hb_001864_030 Hb_001047_140--Hb_001864_030 Hb_001047_140--Hb_008667_050 Hb_001047_140--Hb_000453_210 Hb_000331_310 Hb_000331_310 Hb_001047_140--Hb_000331_310 Hb_004502_080 Hb_004502_080 Hb_001047_140--Hb_004502_080 Hb_004586_450--Hb_056768_010 Hb_000048_100 Hb_000048_100 Hb_004586_450--Hb_000048_100 Hb_001057_050 Hb_001057_050 Hb_004586_450--Hb_001057_050 Hb_000562_080 Hb_000562_080 Hb_004586_450--Hb_000562_080 Hb_004586_450--Hb_001047_140 Hb_029888_020 Hb_029888_020 Hb_004586_450--Hb_029888_020 Hb_039548_010 Hb_039548_010 Hb_017436_010--Hb_039548_010 Hb_005946_030 Hb_005946_030 Hb_017436_010--Hb_005946_030 Hb_004958_030 Hb_004958_030 Hb_017436_010--Hb_004958_030 Hb_006501_030 Hb_006501_030 Hb_017436_010--Hb_006501_030 Hb_188382_010 Hb_188382_010 Hb_017436_010--Hb_188382_010 Hb_000067_020 Hb_000067_020 Hb_017436_010--Hb_000067_020 Hb_056768_010--Hb_000048_100 Hb_029982_010 Hb_029982_010 Hb_056768_010--Hb_029982_010 Hb_056768_010--Hb_008667_050 Hb_078604_010 Hb_078604_010 Hb_056768_010--Hb_078604_010 Hb_056768_010--Hb_005690_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0587799 0 0 0.0655062 0.123811
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.241754 0.063351 0 0.0257727 0

CAGE analysis