Hb_001018_080

Information

Type -
Description -
Location Contig1018: 79351-82523
Sequence    

Annotation

kegg
ID rcu:RCOM_0802950
description hypothetical protein
nr
ID XP_002516564.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RS45
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0802950 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00881: 79345-82406 , PASA_asmbl_00882: 79533-82236
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001018_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011537_020 0.0595084283 - - PREDICTED: uncharacterized serine-rich protein C215.13-like [Jatropha curcas]
3 Hb_002307_010 0.1111410722 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
4 Hb_008899_030 0.1147034111 - - Lipase class 3-related protein, putative [Theobroma cacao]
5 Hb_003842_010 0.1178207196 - - receptor protein kinase, putative [Ricinus communis]
6 Hb_002811_020 0.1210583261 - - Cysteine synthase [Morus notabilis]
7 Hb_000739_160 0.122771383 - - DNA binding protein, putative [Ricinus communis]
8 Hb_011472_020 0.1228105187 - - PREDICTED: mucin-17-like [Jatropha curcas]
9 Hb_003142_060 0.1251262907 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
10 Hb_003106_230 0.1263267616 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
11 Hb_000203_080 0.1263690281 - - Xylem bark cysteine peptidase 3 isoform 1 [Theobroma cacao]
12 Hb_005276_220 0.1284737796 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
13 Hb_000760_080 0.1298863708 - - mutt domain protein, putative [Ricinus communis]
14 Hb_000417_280 0.1306728032 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004627_020 0.1308538035 - - Protein MLO, putative [Ricinus communis]
16 Hb_033312_050 0.1320046624 - - PREDICTED: uncharacterized protein LOC105638598, partial [Jatropha curcas]
17 Hb_006634_090 0.1327787926 - - PREDICTED: uncharacterized protein LOC105646581 [Jatropha curcas]
18 Hb_000096_210 0.1331557393 - - PREDICTED: probable carboxylesterase 7 [Jatropha curcas]
19 Hb_001008_110 0.1346745643 - - -
20 Hb_001114_120 0.1364016143 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_001018_080 Hb_001018_080 Hb_011537_020 Hb_011537_020 Hb_001018_080--Hb_011537_020 Hb_002307_010 Hb_002307_010 Hb_001018_080--Hb_002307_010 Hb_008899_030 Hb_008899_030 Hb_001018_080--Hb_008899_030 Hb_003842_010 Hb_003842_010 Hb_001018_080--Hb_003842_010 Hb_002811_020 Hb_002811_020 Hb_001018_080--Hb_002811_020 Hb_000739_160 Hb_000739_160 Hb_001018_080--Hb_000739_160 Hb_011537_020--Hb_008899_030 Hb_011537_020--Hb_000739_160 Hb_011537_020--Hb_002307_010 Hb_004627_020 Hb_004627_020 Hb_011537_020--Hb_004627_020 Hb_015306_010 Hb_015306_010 Hb_011537_020--Hb_015306_010 Hb_001114_120 Hb_001114_120 Hb_002307_010--Hb_001114_120 Hb_000112_050 Hb_000112_050 Hb_002307_010--Hb_000112_050 Hb_000834_040 Hb_000834_040 Hb_002307_010--Hb_000834_040 Hb_003847_170 Hb_003847_170 Hb_002307_010--Hb_003847_170 Hb_008899_030--Hb_004627_020 Hb_039022_020 Hb_039022_020 Hb_008899_030--Hb_039022_020 Hb_000261_420 Hb_000261_420 Hb_008899_030--Hb_000261_420 Hb_011472_020 Hb_011472_020 Hb_008899_030--Hb_011472_020 Hb_001345_010 Hb_001345_010 Hb_003842_010--Hb_001345_010 Hb_005276_220 Hb_005276_220 Hb_003842_010--Hb_005276_220 Hb_002475_030 Hb_002475_030 Hb_003842_010--Hb_002475_030 Hb_000203_080 Hb_000203_080 Hb_003842_010--Hb_000203_080 Hb_003085_080 Hb_003085_080 Hb_003842_010--Hb_003085_080 Hb_009150_060 Hb_009150_060 Hb_003842_010--Hb_009150_060 Hb_002811_020--Hb_003842_010 Hb_005523_050 Hb_005523_050 Hb_002811_020--Hb_005523_050 Hb_002811_020--Hb_011537_020 Hb_000215_250 Hb_000215_250 Hb_002811_020--Hb_000215_250 Hb_002811_020--Hb_003085_080 Hb_003106_110 Hb_003106_110 Hb_000739_160--Hb_003106_110 Hb_000096_210 Hb_000096_210 Hb_000739_160--Hb_000096_210 Hb_006634_090 Hb_006634_090 Hb_000739_160--Hb_006634_090 Hb_006934_020 Hb_006934_020 Hb_000739_160--Hb_006934_020 Hb_002301_370 Hb_002301_370 Hb_000739_160--Hb_002301_370 Hb_000417_280 Hb_000417_280 Hb_000739_160--Hb_000417_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.103038 3.30471 3.8735 3.51084 0.0579383 0.0949044
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.235763 0.259611 0 7.25354 2.66619

CAGE analysis