Hb_001018_090

Information

Type -
Description -
Location Contig1018: 85134-90207
Sequence    

Annotation

kegg
ID tcc:TCM_037154
description RNA polymerase I-associated factor PAF67 isoform 1
nr
ID XP_012077435.1
description PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
swissprot
ID A7SDW5
description Eukaryotic translation initiation factor 3 subunit L OS=Nematostella vectensis GN=v1g169424 PE=3 SV=1
trembl
ID A0A067KPM2
description Eukaryotic translation initiation factor 3 subunit L OS=Jatropha curcas GN=JCGZ_07776 PE=3 SV=1
Gene Ontology
ID GO:0005852
description eukaryotic translation initiation factor 3 subunit l-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00883: 85124-90158 , PASA_asmbl_00884: 85124-88343
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001018_090 0.0 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
2 Hb_000103_340 0.0683045598 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
3 Hb_000363_310 0.0839716818 - - DNA topoisomerase type I, putative [Ricinus communis]
4 Hb_000567_070 0.0855292137 - - autophagy protein, putative [Ricinus communis]
5 Hb_000635_090 0.0871666025 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
6 Hb_003747_120 0.0875780348 - - PREDICTED: OTU domain-containing protein DDB_G0284757 isoform X1 [Jatropha curcas]
7 Hb_000111_170 0.0908216546 - - PREDICTED: uncharacterized protein LOC105631234 isoform X1 [Jatropha curcas]
8 Hb_007821_020 0.0912726369 - - PREDICTED: 5'-nucleotidase domain-containing protein DDB_G0275467 isoform X2 [Jatropha curcas]
9 Hb_000035_090 0.091371927 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
10 Hb_003225_020 0.0918429674 transcription factor TF Family: HB PREDICTED: homeobox protein HAT3.1 [Jatropha curcas]
11 Hb_170416_010 0.0929959873 - - PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Jatropha curcas]
12 Hb_000773_040 0.0931750022 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
13 Hb_004052_080 0.094096463 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000237_200 0.0941952772 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
15 Hb_053079_020 0.0944874436 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
16 Hb_000181_340 0.0945985652 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
17 Hb_007765_100 0.0954245781 - - PREDICTED: helicase SKI2W [Jatropha curcas]
18 Hb_000184_170 0.0955890123 - - hypothetical protein RCOM_1213430 [Ricinus communis]
19 Hb_008059_010 0.095612418 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
20 Hb_000022_190 0.0957063295 - - PREDICTED: pentatricopeptide repeat-containing protein At3g22690-like [Jatropha curcas]

Gene co-expression network

sample Hb_001018_090 Hb_001018_090 Hb_000103_340 Hb_000103_340 Hb_001018_090--Hb_000103_340 Hb_000363_310 Hb_000363_310 Hb_001018_090--Hb_000363_310 Hb_000567_070 Hb_000567_070 Hb_001018_090--Hb_000567_070 Hb_000635_090 Hb_000635_090 Hb_001018_090--Hb_000635_090 Hb_003747_120 Hb_003747_120 Hb_001018_090--Hb_003747_120 Hb_000111_170 Hb_000111_170 Hb_001018_090--Hb_000111_170 Hb_000214_050 Hb_000214_050 Hb_000103_340--Hb_000214_050 Hb_000103_340--Hb_000635_090 Hb_005214_140 Hb_005214_140 Hb_000103_340--Hb_005214_140 Hb_006275_020 Hb_006275_020 Hb_000103_340--Hb_006275_020 Hb_170416_010 Hb_170416_010 Hb_000103_340--Hb_170416_010 Hb_000347_430 Hb_000347_430 Hb_000363_310--Hb_000347_430 Hb_001377_190 Hb_001377_190 Hb_000363_310--Hb_001377_190 Hb_000773_040 Hb_000773_040 Hb_000363_310--Hb_000773_040 Hb_000363_310--Hb_000111_170 Hb_007765_100 Hb_007765_100 Hb_000363_310--Hb_007765_100 Hb_000749_010 Hb_000749_010 Hb_000363_310--Hb_000749_010 Hb_007821_020 Hb_007821_020 Hb_000567_070--Hb_007821_020 Hb_000390_230 Hb_000390_230 Hb_000567_070--Hb_000390_230 Hb_000254_100 Hb_000254_100 Hb_000567_070--Hb_000254_100 Hb_003186_020 Hb_003186_020 Hb_000567_070--Hb_003186_020 Hb_006483_110 Hb_006483_110 Hb_000567_070--Hb_006483_110 Hb_000115_280 Hb_000115_280 Hb_000567_070--Hb_000115_280 Hb_001518_080 Hb_001518_080 Hb_000635_090--Hb_001518_080 Hb_002027_080 Hb_002027_080 Hb_000635_090--Hb_002027_080 Hb_006913_020 Hb_006913_020 Hb_000635_090--Hb_006913_020 Hb_000270_190 Hb_000270_190 Hb_000635_090--Hb_000270_190 Hb_000635_090--Hb_000773_040 Hb_003747_120--Hb_000111_170 Hb_007283_010 Hb_007283_010 Hb_003747_120--Hb_007283_010 Hb_000085_210 Hb_000085_210 Hb_003747_120--Hb_000085_210 Hb_004631_150 Hb_004631_150 Hb_003747_120--Hb_004631_150 Hb_008059_010 Hb_008059_010 Hb_003747_120--Hb_008059_010 Hb_031284_010 Hb_031284_010 Hb_003747_120--Hb_031284_010 Hb_000111_170--Hb_000085_210 Hb_001221_440 Hb_001221_440 Hb_000111_170--Hb_001221_440 Hb_030414_040 Hb_030414_040 Hb_000111_170--Hb_030414_040 Hb_005288_070 Hb_005288_070 Hb_000111_170--Hb_005288_070 Hb_183433_010 Hb_183433_010 Hb_000111_170--Hb_183433_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.744402 1.0757 1.61585 1.0491 0.931544 1.11498
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.464697 1.04399 1.03983 0.718058 1.67861

CAGE analysis