Hb_001018_130

Information

Type -
Description -
Location Contig1018: 126573-127849
Sequence    

Annotation

kegg
ID rcu:RCOM_0802840
description hypothetical protein
nr
ID XP_012077434.1
description PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQZ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07775 PE=4 SV=1
Gene Ontology
ID GO:0005852
description PREDICTED: uncharacterized protein LOC105638260

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00885: 111890-128271
cDNA
(Sanger)
(ID:Location)		 005_F22.ab1: 126642-128271 , 027_H03.ab1: 127773-128271 , 052_L18.ab1: 127533-128271

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001018_130 0.0 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
2 Hb_005023_010 0.073495408 - - PREDICTED: putative lipase ROG1 [Jatropha curcas]
3 Hb_032050_040 0.0746001157 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
4 Hb_000107_200 0.0765128055 - - hypothetical protein B456_005G214800 [Gossypium raimondii]
5 Hb_000146_050 0.0773904102 - - PREDICTED: protein unc-50 homolog isoform X2 [Gossypium raimondii]
6 Hb_001018_110 0.0796656794 - - unnamed protein product [Coffea canephora]
7 Hb_002445_120 0.0829883775 - - secretory carrier membrane protein, putative [Ricinus communis]
8 Hb_000608_320 0.0833368642 - - PREDICTED: uncharacterized protein LOC105644891 [Jatropha curcas]
9 Hb_012322_020 0.0837653769 - - -
10 Hb_090051_030 0.08404706 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
11 Hb_001882_050 0.085186633 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]
12 Hb_001377_270 0.087188808 - - hypothetical protein CICLE_v10021159mg [Citrus clementina]
13 Hb_002716_130 0.0887507129 - - PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]
14 Hb_009529_030 0.0890983575 - - PREDICTED: transmembrane protein 120 homolog [Jatropha curcas]
15 Hb_005269_040 0.0901181126 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g06270 [Jatropha curcas]
16 Hb_000127_040 0.090786293 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
17 Hb_000318_290 0.0908927748 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
18 Hb_044736_010 0.0913336474 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_001454_130 0.091964681 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
20 Hb_001492_020 0.0926550855 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_001018_130 Hb_001018_130 Hb_005023_010 Hb_005023_010 Hb_001018_130--Hb_005023_010 Hb_032050_040 Hb_032050_040 Hb_001018_130--Hb_032050_040 Hb_000107_200 Hb_000107_200 Hb_001018_130--Hb_000107_200 Hb_000146_050 Hb_000146_050 Hb_001018_130--Hb_000146_050 Hb_001018_110 Hb_001018_110 Hb_001018_130--Hb_001018_110 Hb_002445_120 Hb_002445_120 Hb_001018_130--Hb_002445_120 Hb_090051_030 Hb_090051_030 Hb_005023_010--Hb_090051_030 Hb_000300_630 Hb_000300_630 Hb_005023_010--Hb_000300_630 Hb_005023_010--Hb_001018_110 Hb_001633_130 Hb_001633_130 Hb_005023_010--Hb_001633_130 Hb_005023_010--Hb_000146_050 Hb_007919_100 Hb_007919_100 Hb_032050_040--Hb_007919_100 Hb_003010_020 Hb_003010_020 Hb_032050_040--Hb_003010_020 Hb_152202_010 Hb_152202_010 Hb_032050_040--Hb_152202_010 Hb_002273_120 Hb_002273_120 Hb_032050_040--Hb_002273_120 Hb_002785_050 Hb_002785_050 Hb_032050_040--Hb_002785_050 Hb_000127_040 Hb_000127_040 Hb_032050_040--Hb_000127_040 Hb_008120_010 Hb_008120_010 Hb_000107_200--Hb_008120_010 Hb_000107_200--Hb_002445_120 Hb_002067_120 Hb_002067_120 Hb_000107_200--Hb_002067_120 Hb_000606_090 Hb_000606_090 Hb_000107_200--Hb_000606_090 Hb_001135_060 Hb_001135_060 Hb_000107_200--Hb_001135_060 Hb_000146_050--Hb_090051_030 Hb_012322_020 Hb_012322_020 Hb_000146_050--Hb_012322_020 Hb_000146_050--Hb_001633_130 Hb_158062_010 Hb_158062_010 Hb_000146_050--Hb_158062_010 Hb_000603_150 Hb_000603_150 Hb_000146_050--Hb_000603_150 Hb_000205_300 Hb_000205_300 Hb_000146_050--Hb_000205_300 Hb_001018_110--Hb_000300_630 Hb_044736_010 Hb_044736_010 Hb_001018_110--Hb_044736_010 Hb_003994_280 Hb_003994_280 Hb_001018_110--Hb_003994_280 Hb_072922_010 Hb_072922_010 Hb_001018_110--Hb_072922_010 Hb_003777_310 Hb_003777_310 Hb_002445_120--Hb_003777_310 Hb_000318_290 Hb_000318_290 Hb_002445_120--Hb_000318_290 Hb_000056_260 Hb_000056_260 Hb_002445_120--Hb_000056_260 Hb_002445_120--Hb_001633_130 Hb_002445_120--Hb_044736_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.5581 15.6845 10.2797 35.9783 22.4752 33.8895
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.2944 16.0197 18.4887 15.4318 16.909

CAGE analysis