Hb_001019_020

Information

Type -
Description -
Location Contig1019: 30808-35262
Sequence    

Annotation

kegg
ID rcu:RCOM_1443460
description hypothetical protein
nr
ID XP_002512780.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LDX1
description Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidopsis thaliana GN=SGS3 PE=1 SV=1
trembl
ID B9RGS1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1443460 PE=4 SV=1
Gene Ontology
ID GO:0031047
description protein suppressor of gene silencing 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00908: 34921-35226
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001019_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_094437_050 0.0933237928 - - PREDICTED: uncharacterized protein LOC105630877 isoform X2 [Jatropha curcas]
3 Hb_002233_080 0.0961846504 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
4 Hb_001247_160 0.103023649 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
5 Hb_000047_010 0.1194514322 - - PREDICTED: expansin-like A1 [Jatropha curcas]
6 Hb_012272_010 0.1214337903 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
7 Hb_011915_020 0.1232877272 - - PREDICTED: arogenate dehydratase/prephenate dehydratase 6, chloroplastic-like [Jatropha curcas]
8 Hb_003078_070 0.1245865877 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g25290 [Jatropha curcas]
9 Hb_000418_060 0.124807865 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
10 Hb_002936_030 0.1273773305 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
11 Hb_000892_030 0.1301107475 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
12 Hb_010721_010 0.1328352728 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Populus euphratica]
13 Hb_001254_020 0.1377607796 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
14 Hb_046109_010 0.1382605101 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
15 Hb_001610_070 0.1387284158 - - hypothetical protein MIMGU_mgv1a022867mg [Erythranthe guttata]
16 Hb_005048_120 0.1388345754 - - -
17 Hb_076771_010 0.1388401279 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
18 Hb_033053_010 0.1403343778 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
19 Hb_008948_110 0.1407016963 - - PREDICTED: peroxidase 25 [Jatropha curcas]
20 Hb_005282_010 0.1418824428 - - PREDICTED: probable xyloglucan glycosyltransferase 12 [Populus euphratica]

Gene co-expression network

sample Hb_001019_020 Hb_001019_020 Hb_094437_050 Hb_094437_050 Hb_001019_020--Hb_094437_050 Hb_002233_080 Hb_002233_080 Hb_001019_020--Hb_002233_080 Hb_001247_160 Hb_001247_160 Hb_001019_020--Hb_001247_160 Hb_000047_010 Hb_000047_010 Hb_001019_020--Hb_000047_010 Hb_012272_010 Hb_012272_010 Hb_001019_020--Hb_012272_010 Hb_011915_020 Hb_011915_020 Hb_001019_020--Hb_011915_020 Hb_002498_250 Hb_002498_250 Hb_094437_050--Hb_002498_250 Hb_000892_030 Hb_000892_030 Hb_094437_050--Hb_000892_030 Hb_005725_280 Hb_005725_280 Hb_094437_050--Hb_005725_280 Hb_002400_040 Hb_002400_040 Hb_094437_050--Hb_002400_040 Hb_094437_050--Hb_000047_010 Hb_076771_010 Hb_076771_010 Hb_002233_080--Hb_076771_010 Hb_001675_310 Hb_001675_310 Hb_002233_080--Hb_001675_310 Hb_002233_080--Hb_012272_010 Hb_004297_080 Hb_004297_080 Hb_002233_080--Hb_004297_080 Hb_002233_080--Hb_094437_050 Hb_003633_150 Hb_003633_150 Hb_001247_160--Hb_003633_150 Hb_000985_140 Hb_000985_140 Hb_001247_160--Hb_000985_140 Hb_021254_020 Hb_021254_020 Hb_001247_160--Hb_021254_020 Hb_002936_030 Hb_002936_030 Hb_001247_160--Hb_002936_030 Hb_003078_070 Hb_003078_070 Hb_001247_160--Hb_003078_070 Hb_000047_010--Hb_000892_030 Hb_000418_060 Hb_000418_060 Hb_000047_010--Hb_000418_060 Hb_006002_020 Hb_006002_020 Hb_000047_010--Hb_006002_020 Hb_004109_110 Hb_004109_110 Hb_000047_010--Hb_004109_110 Hb_000047_010--Hb_002400_040 Hb_006153_020 Hb_006153_020 Hb_000047_010--Hb_006153_020 Hb_005048_120 Hb_005048_120 Hb_012272_010--Hb_005048_120 Hb_010721_010 Hb_010721_010 Hb_012272_010--Hb_010721_010 Hb_007904_290 Hb_007904_290 Hb_012272_010--Hb_007904_290 Hb_001189_150 Hb_001189_150 Hb_012272_010--Hb_001189_150 Hb_012272_010--Hb_002936_030 Hb_001610_070 Hb_001610_070 Hb_011915_020--Hb_001610_070 Hb_002374_030 Hb_002374_030 Hb_011915_020--Hb_002374_030 Hb_029622_090 Hb_029622_090 Hb_011915_020--Hb_029622_090 Hb_001198_160 Hb_001198_160 Hb_011915_020--Hb_001198_160 Hb_011915_020--Hb_010721_010 Hb_002048_070 Hb_002048_070 Hb_011915_020--Hb_002048_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.323346 14.849 11.8311 11.5277 0.871582 0.196738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.262519 0.0737748 0.140478 1.21336 2.6938

CAGE analysis