Hb_001019_030

Information

Type -
Description -
Location Contig1019: 36765-40397
Sequence    

Annotation

kegg
ID rcu:RCOM_1443470
description AMP dependent CoA ligase, putative (EC:1.13.12.7)
nr
ID XP_012067426.1
description PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
swissprot
ID O24145
description 4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1
trembl
ID A0A067LBN4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26923 PE=4 SV=1
Gene Ontology
ID GO:0003824
description 4-coumarate: ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00909: 36784-40450
cDNA
(Sanger)
(ID:Location)		 040_C24.ab1: 36784-37599

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001019_030 0.0 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
2 Hb_006386_010 0.0912816912 - - PREDICTED: polygalacturonase QRT3 [Jatropha curcas]
3 Hb_001268_290 0.0923136851 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
4 Hb_184074_010 0.0949372593 - - PREDICTED: uncharacterized protein LOC105639054 [Jatropha curcas]
5 Hb_000334_030 0.1029563322 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004930_020 0.1046388138 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
7 Hb_005116_040 0.1133626396 - - PREDICTED: uncharacterized protein LOC105131445 [Populus euphratica]
8 Hb_025557_070 0.1161466577 transcription factor TF Family: zf-HD hypothetical protein JCGZ_11626 [Jatropha curcas]
9 Hb_000046_390 0.1169654593 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
10 Hb_064047_020 0.1178778017 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
11 Hb_000080_100 0.1233662631 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
12 Hb_000188_040 0.1253089707 - - PREDICTED: uncharacterized protein LOC105629522 [Jatropha curcas]
13 Hb_000959_110 0.1281077127 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera]
14 Hb_188281_020 0.1304088624 - - PREDICTED: uncharacterized protein LOC105629522 [Jatropha curcas]
15 Hb_025557_080 0.1328091556 transcription factor TF Family: zf-HD -
16 Hb_002171_050 0.1330354962 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Populus euphratica]
17 Hb_001195_710 0.137285877 - - glycosyltransferase family GT8 protein [Populus deltoides]
18 Hb_004625_020 0.1387924278 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
19 Hb_001410_080 0.1394056661 - - ring finger protein, putative [Ricinus communis]
20 Hb_002750_030 0.1410294451 - - PREDICTED: protein IRX15-LIKE-like [Populus euphratica]

Gene co-expression network

sample Hb_001019_030 Hb_001019_030 Hb_006386_010 Hb_006386_010 Hb_001019_030--Hb_006386_010 Hb_001268_290 Hb_001268_290 Hb_001019_030--Hb_001268_290 Hb_184074_010 Hb_184074_010 Hb_001019_030--Hb_184074_010 Hb_000334_030 Hb_000334_030 Hb_001019_030--Hb_000334_030 Hb_004930_020 Hb_004930_020 Hb_001019_030--Hb_004930_020 Hb_005116_040 Hb_005116_040 Hb_001019_030--Hb_005116_040 Hb_006386_010--Hb_001268_290 Hb_001410_080 Hb_001410_080 Hb_006386_010--Hb_001410_080 Hb_000910_030 Hb_000910_030 Hb_006386_010--Hb_000910_030 Hb_000344_030 Hb_000344_030 Hb_006386_010--Hb_000344_030 Hb_001195_710 Hb_001195_710 Hb_006386_010--Hb_001195_710 Hb_001268_290--Hb_001410_080 Hb_001268_290--Hb_184074_010 Hb_182869_010 Hb_182869_010 Hb_001268_290--Hb_182869_010 Hb_001268_290--Hb_001195_710 Hb_184074_010--Hb_000334_030 Hb_000620_050 Hb_000620_050 Hb_184074_010--Hb_000620_050 Hb_000959_110 Hb_000959_110 Hb_184074_010--Hb_000959_110 Hb_184074_010--Hb_004930_020 Hb_003371_280 Hb_003371_280 Hb_184074_010--Hb_003371_280 Hb_006755_030 Hb_006755_030 Hb_184074_010--Hb_006755_030 Hb_000334_030--Hb_004930_020 Hb_000334_030--Hb_000959_110 Hb_001500_090 Hb_001500_090 Hb_000334_030--Hb_001500_090 Hb_002750_030 Hb_002750_030 Hb_000334_030--Hb_002750_030 Hb_000193_320 Hb_000193_320 Hb_000334_030--Hb_000193_320 Hb_004930_020--Hb_000959_110 Hb_001976_100 Hb_001976_100 Hb_004930_020--Hb_001976_100 Hb_000009_250 Hb_000009_250 Hb_004930_020--Hb_000009_250 Hb_000685_100 Hb_000685_100 Hb_005116_040--Hb_000685_100 Hb_025557_070 Hb_025557_070 Hb_005116_040--Hb_025557_070 Hb_007237_060 Hb_007237_060 Hb_005116_040--Hb_007237_060 Hb_000917_030 Hb_000917_030 Hb_005116_040--Hb_000917_030 Hb_000034_060 Hb_000034_060 Hb_005116_040--Hb_000034_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.369618 25.2352 14.4803 527.095 0.907792 0.243528
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.138326 0.126977 0.137522 51.0679 204.327

CAGE analysis