Hb_001019_040

Information

Type -
Description -
Location Contig1019: 41309-47386
Sequence    

Annotation

kegg
ID pop:POPTR_0014s13760g
description POPTRDRAFT_246206; hypothetical protein
nr
ID XP_012067424.1
description PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]
swissprot
ID Q851Y7
description Monothiol glutaredoxin-S7, chloroplastic OS=Oryza sativa subsp. japonica GN=GRXS7 PE=2 SV=1
trembl
ID A0A067LCS9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26922 PE=4 SV=1
Gene Ontology
ID GO:0009055
description monothiol glutaredoxin- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00910: 46201-47263 , PASA_asmbl_00911: 41276-47263 , PASA_asmbl_00912: 46974-47233
cDNA
(Sanger)
(ID:Location)		 048_H04.ab1: 41304-47263

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001019_040 0.0 - - PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]
2 Hb_001840_120 0.1055307391 - - PREDICTED: uncharacterized protein LOC104228746 [Nicotiana sylvestris]
3 Hb_001587_020 0.1156008844 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
4 Hb_000329_310 0.1190787848 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
5 Hb_020000_010 0.1196470189 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
6 Hb_001117_090 0.1221300763 - - PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
7 Hb_000170_010 0.122349753 - - o-methyltransferase, putative [Ricinus communis]
8 Hb_089839_020 0.123887394 - - hypothetical protein POPTR_0017s14180g [Populus trichocarpa]
9 Hb_011465_040 0.1241144149 - - PREDICTED: transcription and mRNA export factor SUS1 isoform X1 [Jatropha curcas]
10 Hb_001246_060 0.1257513404 - - ATP binding protein, putative [Ricinus communis]
11 Hb_012338_010 0.1291814667 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000030_100 0.1295841923 - - PREDICTED: short-chain type dehydrogenase/reductase isoform X2 [Jatropha curcas]
13 Hb_005701_020 0.1298557274 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
14 Hb_148209_080 0.1305770193 - - MED32, putative [Theobroma cacao]
15 Hb_000327_190 0.1310978023 - - PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Jatropha curcas]
16 Hb_001235_210 0.1314571623 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
17 Hb_000230_540 0.1316042605 - - PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Sesamum indicum]
18 Hb_000580_080 0.1334700104 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
19 Hb_003734_140 0.1336690859 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004324_250 0.1344916962 - - PREDICTED: protein IWS1 homolog A isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001019_040 Hb_001019_040 Hb_001840_120 Hb_001840_120 Hb_001019_040--Hb_001840_120 Hb_001587_020 Hb_001587_020 Hb_001019_040--Hb_001587_020 Hb_000329_310 Hb_000329_310 Hb_001019_040--Hb_000329_310 Hb_020000_010 Hb_020000_010 Hb_001019_040--Hb_020000_010 Hb_001117_090 Hb_001117_090 Hb_001019_040--Hb_001117_090 Hb_000170_010 Hb_000170_010 Hb_001019_040--Hb_000170_010 Hb_004595_020 Hb_004595_020 Hb_001840_120--Hb_004595_020 Hb_011139_020 Hb_011139_020 Hb_001840_120--Hb_011139_020 Hb_012515_010 Hb_012515_010 Hb_001840_120--Hb_012515_010 Hb_000465_060 Hb_000465_060 Hb_001840_120--Hb_000465_060 Hb_000928_240 Hb_000928_240 Hb_001840_120--Hb_000928_240 Hb_025193_050 Hb_025193_050 Hb_001840_120--Hb_025193_050 Hb_004951_040 Hb_004951_040 Hb_001587_020--Hb_004951_040 Hb_008289_060 Hb_008289_060 Hb_001587_020--Hb_008289_060 Hb_011465_040 Hb_011465_040 Hb_001587_020--Hb_011465_040 Hb_000030_100 Hb_000030_100 Hb_001587_020--Hb_000030_100 Hb_016065_010 Hb_016065_010 Hb_001587_020--Hb_016065_010 Hb_000923_070 Hb_000923_070 Hb_001587_020--Hb_000923_070 Hb_001829_060 Hb_001829_060 Hb_000329_310--Hb_001829_060 Hb_000205_270 Hb_000205_270 Hb_000329_310--Hb_000205_270 Hb_001109_020 Hb_001109_020 Hb_000329_310--Hb_001109_020 Hb_003455_040 Hb_003455_040 Hb_000329_310--Hb_003455_040 Hb_003927_130 Hb_003927_130 Hb_000329_310--Hb_003927_130 Hb_000329_310--Hb_000170_010 Hb_024714_010 Hb_024714_010 Hb_020000_010--Hb_024714_010 Hb_024185_020 Hb_024185_020 Hb_020000_010--Hb_024185_020 Hb_008554_070 Hb_008554_070 Hb_020000_010--Hb_008554_070 Hb_001360_050 Hb_001360_050 Hb_020000_010--Hb_001360_050 Hb_011671_220 Hb_011671_220 Hb_020000_010--Hb_011671_220 Hb_002759_060 Hb_002759_060 Hb_020000_010--Hb_002759_060 Hb_000926_300 Hb_000926_300 Hb_001117_090--Hb_000926_300 Hb_003599_040 Hb_003599_040 Hb_001117_090--Hb_003599_040 Hb_000877_020 Hb_000877_020 Hb_001117_090--Hb_000877_020 Hb_000340_140 Hb_000340_140 Hb_001117_090--Hb_000340_140 Hb_009421_040 Hb_009421_040 Hb_001117_090--Hb_009421_040 Hb_001246_060 Hb_001246_060 Hb_001117_090--Hb_001246_060 Hb_004837_140 Hb_004837_140 Hb_000170_010--Hb_004837_140 Hb_002963_010 Hb_002963_010 Hb_000170_010--Hb_002963_010 Hb_005432_030 Hb_005432_030 Hb_000170_010--Hb_005432_030 Hb_000625_070 Hb_000625_070 Hb_000170_010--Hb_000625_070 Hb_012338_010 Hb_012338_010 Hb_000170_010--Hb_012338_010 Hb_002918_200 Hb_002918_200 Hb_000170_010--Hb_002918_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9388 8.41314 5.36385 2.44778 26.9865 32.2338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.269 49.325 29.1656 18.3578 15.1703

CAGE analysis