Hb_001019_050

Information

Type -
Description -
Location Contig1019: 47699-70490
Sequence    

Annotation

kegg
ID rcu:RCOM_1443590
description Transportin-3, putative
nr
ID XP_012067423.1
description PREDICTED: importin-13 [Jatropha curcas]
swissprot
ID Q9USZ2
description Uncharacterized protein C11G11.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC11G11.07 PE=3 SV=2
trembl
ID A0A067L3U1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26921 PE=4 SV=1
Gene Ontology
ID GO:0005488
description importin-13 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00913: 47612-50769 , PASA_asmbl_00914: 50893-64368 , PASA_asmbl_00915: 64114-64386 , PASA_asmbl_00916: 61844-63443 , PASA_asmbl_00917: 64703-70419
cDNA
(Sanger)
(ID:Location)		 048_H04r.ab1: 41276-46931

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001019_050 0.0 - - PREDICTED: importin-13 [Jatropha curcas]
2 Hb_000088_270 0.0661382047 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
3 Hb_025336_020 0.0847554017 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
4 Hb_000347_450 0.0915844993 - - PREDICTED: tRNA(His) guanylyltransferase 1-like isoform X2 [Jatropha curcas]
5 Hb_000159_120 0.0918017797 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
6 Hb_107298_010 0.093116419 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
7 Hb_005489_140 0.0956333886 - - PREDICTED: maspardin [Jatropha curcas]
8 Hb_119530_010 0.0990074799 - - -
9 Hb_004677_050 0.099420986 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
10 Hb_073171_100 0.103181975 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
11 Hb_011224_160 0.1032360419 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
12 Hb_002213_020 0.103376664 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
13 Hb_132880_040 0.1042186115 - - PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X2 [Jatropha curcas]
14 Hb_003777_290 0.1042353773 - - polypyrimidine tract binding protein, putative [Ricinus communis]
15 Hb_002357_060 0.1063683491 - - hypothetical protein CICLE_v10006112mg [Citrus clementina]
16 Hb_003906_170 0.1066346063 - - alcohol dehydrogenase, putative [Ricinus communis]
17 Hb_006501_160 0.1067112528 - - PREDICTED: hexokinase-1-like [Jatropha curcas]
18 Hb_012022_080 0.107519821 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_016347_010 0.1075727083 - - protein transporter, putative [Ricinus communis]
20 Hb_001269_380 0.1078010101 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001019_050 Hb_001019_050 Hb_000088_270 Hb_000088_270 Hb_001019_050--Hb_000088_270 Hb_025336_020 Hb_025336_020 Hb_001019_050--Hb_025336_020 Hb_000347_450 Hb_000347_450 Hb_001019_050--Hb_000347_450 Hb_000159_120 Hb_000159_120 Hb_001019_050--Hb_000159_120 Hb_107298_010 Hb_107298_010 Hb_001019_050--Hb_107298_010 Hb_005489_140 Hb_005489_140 Hb_001019_050--Hb_005489_140 Hb_011224_160 Hb_011224_160 Hb_000088_270--Hb_011224_160 Hb_000088_270--Hb_000347_450 Hb_000008_420 Hb_000008_420 Hb_000088_270--Hb_000008_420 Hb_000088_270--Hb_025336_020 Hb_003777_290 Hb_003777_290 Hb_000088_270--Hb_003777_290 Hb_007423_050 Hb_007423_050 Hb_025336_020--Hb_007423_050 Hb_012022_080 Hb_012022_080 Hb_025336_020--Hb_012022_080 Hb_025336_020--Hb_000008_420 Hb_025336_020--Hb_005489_140 Hb_000347_450--Hb_011224_160 Hb_000684_040 Hb_000684_040 Hb_000347_450--Hb_000684_040 Hb_050847_050 Hb_050847_050 Hb_000347_450--Hb_050847_050 Hb_010775_040 Hb_010775_040 Hb_000347_450--Hb_010775_040 Hb_000183_090 Hb_000183_090 Hb_000347_450--Hb_000183_090 Hb_000159_120--Hb_012022_080 Hb_008226_070 Hb_008226_070 Hb_000159_120--Hb_008226_070 Hb_003906_170 Hb_003906_170 Hb_000159_120--Hb_003906_170 Hb_001221_020 Hb_001221_020 Hb_000159_120--Hb_001221_020 Hb_000159_120--Hb_107298_010 Hb_004837_280 Hb_004837_280 Hb_107298_010--Hb_004837_280 Hb_107298_010--Hb_005489_140 Hb_001900_100 Hb_001900_100 Hb_107298_010--Hb_001900_100 Hb_107298_010--Hb_003777_290 Hb_089140_040 Hb_089140_040 Hb_005489_140--Hb_089140_040 Hb_083799_010 Hb_083799_010 Hb_005489_140--Hb_083799_010 Hb_008790_020 Hb_008790_020 Hb_005489_140--Hb_008790_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.28472 7.47494 4.13278 8.17463 2.67221 4.29604
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.85392 5.52441 2.25724 11.5058 6.20489

CAGE analysis