Hb_001019_100

Information

Type -
Description -
Location Contig1019: 120237-123211
Sequence    

Annotation

kegg
ID pvu:PHAVU_009G095600g
description hypothetical protein
nr
ID CDY06600.1
description BnaC02g13240D [Brassica napus]
swissprot
ID Q8H156
description GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2
trembl
ID A0A078EX10
description BnaC02g13240D protein OS=Brassica napus GN=BnaC02g13240D PE=4 SV=1
Gene Ontology
ID GO:0005622
description gtp-binding nuclear protein ran-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00924: 120426-123608 , PASA_asmbl_00925: 120426-123608
cDNA
(Sanger)
(ID:Location)		 003_G09.ab1: 120426-123010 , 019_E17.ab1: 120426-122393

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001019_100 0.0 - - BnaC02g13240D [Brassica napus]
2 Hb_003124_150 0.0798115695 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like [Jatropha curcas]
3 Hb_003360_040 0.0862753522 - - PREDICTED: uncharacterized protein LOC105634704 [Jatropha curcas]
4 Hb_000920_200 0.0880786758 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
5 Hb_000309_130 0.0926247401 - - hypothetical protein JCGZ_09592 [Jatropha curcas]
6 Hb_002119_130 0.0939122372 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
7 Hb_006740_030 0.0953231965 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
8 Hb_001287_040 0.0959628244 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
9 Hb_005167_010 0.0978790955 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
10 Hb_000140_090 0.0982374481 - - PREDICTED: C-terminal binding protein AN [Jatropha curcas]
11 Hb_001541_120 0.100455575 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
12 Hb_000733_180 0.1009060903 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
13 Hb_000580_020 0.1021833179 - - unnamed protein product [Vitis vinifera]
14 Hb_006132_090 0.1037169702 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
15 Hb_062226_060 0.1055554369 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
16 Hb_007425_010 0.1060186177 - - uncharacterized protein LOC100499741 [Glycine max]
17 Hb_000505_130 0.1081286124 - - PREDICTED: uncharacterized protein LOC105641262 isoform X1 [Jatropha curcas]
18 Hb_001635_190 0.1083283625 - - RNA m5u methyltransferase, putative [Ricinus communis]
19 Hb_000928_070 0.1086331588 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
20 Hb_044653_040 0.1096574564 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]

Gene co-expression network

sample Hb_001019_100 Hb_001019_100 Hb_003124_150 Hb_003124_150 Hb_001019_100--Hb_003124_150 Hb_003360_040 Hb_003360_040 Hb_001019_100--Hb_003360_040 Hb_000920_200 Hb_000920_200 Hb_001019_100--Hb_000920_200 Hb_000309_130 Hb_000309_130 Hb_001019_100--Hb_000309_130 Hb_002119_130 Hb_002119_130 Hb_001019_100--Hb_002119_130 Hb_006740_030 Hb_006740_030 Hb_001019_100--Hb_006740_030 Hb_000310_020 Hb_000310_020 Hb_003124_150--Hb_000310_020 Hb_000928_070 Hb_000928_070 Hb_003124_150--Hb_000928_070 Hb_000505_130 Hb_000505_130 Hb_003124_150--Hb_000505_130 Hb_000729_030 Hb_000729_030 Hb_003124_150--Hb_000729_030 Hb_000336_150 Hb_000336_150 Hb_003124_150--Hb_000336_150 Hb_000580_020 Hb_000580_020 Hb_003124_150--Hb_000580_020 Hb_003360_040--Hb_002119_130 Hb_007218_120 Hb_007218_120 Hb_003360_040--Hb_007218_120 Hb_000454_090 Hb_000454_090 Hb_003360_040--Hb_000454_090 Hb_003360_040--Hb_000920_200 Hb_000140_090 Hb_000140_090 Hb_003360_040--Hb_000140_090 Hb_001218_030 Hb_001218_030 Hb_000920_200--Hb_001218_030 Hb_000920_200--Hb_002119_130 Hb_006573_190 Hb_006573_190 Hb_000920_200--Hb_006573_190 Hb_001828_150 Hb_001828_150 Hb_000920_200--Hb_001828_150 Hb_000853_150 Hb_000853_150 Hb_000920_200--Hb_000853_150 Hb_001195_060 Hb_001195_060 Hb_000920_200--Hb_001195_060 Hb_000733_180 Hb_000733_180 Hb_000309_130--Hb_000733_180 Hb_000309_130--Hb_003124_150 Hb_000309_130--Hb_000928_070 Hb_022250_060 Hb_022250_060 Hb_000309_130--Hb_022250_060 Hb_000221_190 Hb_000221_190 Hb_000309_130--Hb_000221_190 Hb_002119_130--Hb_007218_120 Hb_002119_130--Hb_001218_030 Hb_000173_410 Hb_000173_410 Hb_002119_130--Hb_000173_410 Hb_002119_130--Hb_000454_090 Hb_006740_030--Hb_000140_090 Hb_001541_120 Hb_001541_120 Hb_006740_030--Hb_001541_120 Hb_006740_030--Hb_000928_070 Hb_000811_070 Hb_000811_070 Hb_006740_030--Hb_000811_070 Hb_008421_020 Hb_008421_020 Hb_006740_030--Hb_008421_020 Hb_007533_040 Hb_007533_040 Hb_006740_030--Hb_007533_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.0725 85.7907 179.406 114.996 46.8007 39.9895
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
146.755 160.899 153.655 93.4938 121.283

CAGE analysis