Hb_001019_120

Information

Type -
Description -
Location Contig1019: 163132-166008
Sequence    

Annotation

kegg
ID rcu:RCOM_0220570
description RNA binding protein, putative
nr
ID XP_012078718.1
description PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KKL8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13284 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00929: 163646-163923 , PASA_asmbl_00930: 164075-165758
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001019_120 0.0 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
2 Hb_036702_010 0.1365745831 - - phosphoprotein phosphatase, putative [Ricinus communis]
3 Hb_067776_020 0.1724908032 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
4 Hb_002159_030 0.2007598005 - - AP-1 complex subunit gamma-2, putative [Ricinus communis]
5 Hb_004324_240 0.201747249 - - tetrahydrofolylpolyglutamate synthase, putative [Ricinus communis]
6 Hb_007933_020 0.208815876 - - PREDICTED: uncharacterized protein At4g37920, chloroplastic [Jatropha curcas]
7 Hb_004987_070 0.2165436671 - - PREDICTED: heat shock 70 kDa protein 17-like isoform X1 [Jatropha curcas]
8 Hb_004449_240 0.2167399577 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
9 Hb_001718_050 0.2168603624 - - PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]
10 Hb_005460_030 0.217328313 - - PREDICTED: RING-H2 finger protein ATL65 [Jatropha curcas]
11 Hb_030627_040 0.2180131095 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
12 Hb_002742_070 0.2182462446 - - PREDICTED: villin-4-like [Jatropha curcas]
13 Hb_004657_090 0.2199872861 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
14 Hb_000258_020 0.2234366296 - - PREDICTED: RING-H2 finger protein ATL74 [Jatropha curcas]
15 Hb_021068_010 0.2283772798 - - PREDICTED: MADS-box transcription factor 23-like isoform X1 [Jatropha curcas]
16 Hb_001709_130 0.2285952745 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
17 Hb_004361_020 0.2312009237 - - PREDICTED: uncharacterized protein LOC102625775 [Citrus sinensis]
18 Hb_000927_040 0.2347374702 - - -
19 Hb_018954_020 0.2348539878 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH13 [Jatropha curcas]
20 Hb_003436_050 0.2349479184 - - arf gtpase-activating protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001019_120 Hb_001019_120 Hb_036702_010 Hb_036702_010 Hb_001019_120--Hb_036702_010 Hb_067776_020 Hb_067776_020 Hb_001019_120--Hb_067776_020 Hb_002159_030 Hb_002159_030 Hb_001019_120--Hb_002159_030 Hb_004324_240 Hb_004324_240 Hb_001019_120--Hb_004324_240 Hb_007933_020 Hb_007933_020 Hb_001019_120--Hb_007933_020 Hb_004987_070 Hb_004987_070 Hb_001019_120--Hb_004987_070 Hb_001014_130 Hb_001014_130 Hb_036702_010--Hb_001014_130 Hb_002742_070 Hb_002742_070 Hb_036702_010--Hb_002742_070 Hb_011953_030 Hb_011953_030 Hb_036702_010--Hb_011953_030 Hb_000330_160 Hb_000330_160 Hb_036702_010--Hb_000330_160 Hb_000062_060 Hb_000062_060 Hb_036702_010--Hb_000062_060 Hb_003388_030 Hb_003388_030 Hb_067776_020--Hb_003388_030 Hb_000084_280 Hb_000084_280 Hb_067776_020--Hb_000084_280 Hb_005470_020 Hb_005470_020 Hb_067776_020--Hb_005470_020 Hb_000170_190 Hb_000170_190 Hb_067776_020--Hb_000170_190 Hb_067776_020--Hb_004987_070 Hb_001009_100 Hb_001009_100 Hb_067776_020--Hb_001009_100 Hb_002159_040 Hb_002159_040 Hb_002159_030--Hb_002159_040 Hb_006882_010 Hb_006882_010 Hb_002159_030--Hb_006882_010 Hb_000441_160 Hb_000441_160 Hb_002159_030--Hb_000441_160 Hb_000329_490 Hb_000329_490 Hb_002159_030--Hb_000329_490 Hb_000244_240 Hb_000244_240 Hb_002159_030--Hb_000244_240 Hb_004143_070 Hb_004143_070 Hb_002159_030--Hb_004143_070 Hb_005460_030 Hb_005460_030 Hb_004324_240--Hb_005460_030 Hb_018954_020 Hb_018954_020 Hb_004324_240--Hb_018954_020 Hb_001916_120 Hb_001916_120 Hb_004324_240--Hb_001916_120 Hb_004324_240--Hb_002159_030 Hb_000016_030 Hb_000016_030 Hb_004324_240--Hb_000016_030 Hb_000215_260 Hb_000215_260 Hb_004324_240--Hb_000215_260 Hb_000927_040 Hb_000927_040 Hb_007933_020--Hb_000927_040 Hb_012384_050 Hb_012384_050 Hb_007933_020--Hb_012384_050 Hb_000258_020 Hb_000258_020 Hb_007933_020--Hb_000258_020 Hb_029921_020 Hb_029921_020 Hb_007933_020--Hb_029921_020 Hb_007933_020--Hb_002159_030 Hb_003058_020 Hb_003058_020 Hb_004987_070--Hb_003058_020 Hb_000015_100 Hb_000015_100 Hb_004987_070--Hb_000015_100 Hb_004987_070--Hb_003388_030 Hb_000384_080 Hb_000384_080 Hb_004987_070--Hb_000384_080 Hb_004987_070--Hb_005470_020 Hb_000780_190 Hb_000780_190 Hb_004987_070--Hb_000780_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.22522 0.83224 1.43737 2.08036 4.68693 9.46342
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.522867 0.0967898 0.409365 1.09123 5.52087

CAGE analysis