Hb_001019_150

Information

Type -
Description -
Location Contig1019: 208563-219671
Sequence    

Annotation

kegg
ID rcu:RCOM_0220610
description Acyl-protein thioesterase, putative (EC:3.1.1.1)
nr
ID XP_002524444.1
description Acyl-protein thioesterase, putative [Ricinus communis]
swissprot
ID O95372
description Acyl-protein thioesterase 2 OS=Homo sapiens GN=LYPLA2 PE=1 SV=1
trembl
ID B9SEM5
description Acyl-protein thioesterase, putative OS=Ricinus communis GN=RCOM_0220610 PE=4 SV=1
Gene Ontology
ID GO:0016787
description acyl-protein thioesterase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00934: 213956-219688
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001019_150 0.0 - - Acyl-protein thioesterase, putative [Ricinus communis]
2 Hb_003106_100 0.0786364015 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
3 Hb_002876_020 0.089839664 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
4 Hb_000056_070 0.0901250333 - - -
5 Hb_007827_010 0.0947586351 - - PREDICTED: uncharacterized protein C12B10.15c [Jatropha curcas]
6 Hb_001329_150 0.0952571407 - - PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]
7 Hb_001353_010 0.0972801262 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
8 Hb_000428_060 0.0975364961 - - malate dehydrogenase, putative [Ricinus communis]
9 Hb_002303_060 0.1027748709 - - conserved hypothetical protein [Ricinus communis]
10 Hb_180343_010 0.1030218454 - - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis]
11 Hb_000431_070 0.1035574244 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
12 Hb_002609_200 0.1054103876 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_002000_140 0.1063151048 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
14 Hb_001053_140 0.1070846126 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
15 Hb_002314_010 0.1078413995 - - hypothetical protein JCGZ_15712 [Jatropha curcas]
16 Hb_001123_160 0.1087997792 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
17 Hb_001377_450 0.1110585144 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 2 isoform X1 [Jatropha curcas]
18 Hb_003605_160 0.1114945443 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
19 Hb_010560_030 0.1118909806 - - PREDICTED: mitochondrial pyruvate carrier 4-like [Jatropha curcas]
20 Hb_002872_050 0.1120352641 - - PREDICTED: thioredoxin-like 3-2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001019_150 Hb_001019_150 Hb_003106_100 Hb_003106_100 Hb_001019_150--Hb_003106_100 Hb_002876_020 Hb_002876_020 Hb_001019_150--Hb_002876_020 Hb_000056_070 Hb_000056_070 Hb_001019_150--Hb_000056_070 Hb_007827_010 Hb_007827_010 Hb_001019_150--Hb_007827_010 Hb_001329_150 Hb_001329_150 Hb_001019_150--Hb_001329_150 Hb_001353_010 Hb_001353_010 Hb_001019_150--Hb_001353_010 Hb_003106_100--Hb_002876_020 Hb_000649_140 Hb_000649_140 Hb_003106_100--Hb_000649_140 Hb_000428_060 Hb_000428_060 Hb_003106_100--Hb_000428_060 Hb_003106_100--Hb_001353_010 Hb_000465_070 Hb_000465_070 Hb_003106_100--Hb_000465_070 Hb_002876_020--Hb_000649_140 Hb_002876_020--Hb_000428_060 Hb_002876_020--Hb_001353_010 Hb_001242_080 Hb_001242_080 Hb_002876_020--Hb_001242_080 Hb_002872_050 Hb_002872_050 Hb_000056_070--Hb_002872_050 Hb_003880_030 Hb_003880_030 Hb_000056_070--Hb_003880_030 Hb_000056_070--Hb_003106_100 Hb_000056_070--Hb_001329_150 Hb_003050_280 Hb_003050_280 Hb_000056_070--Hb_003050_280 Hb_002609_200 Hb_002609_200 Hb_007827_010--Hb_002609_200 Hb_001279_080 Hb_001279_080 Hb_007827_010--Hb_001279_080 Hb_007827_010--Hb_002872_050 Hb_000107_150 Hb_000107_150 Hb_007827_010--Hb_000107_150 Hb_000431_070 Hb_000431_070 Hb_007827_010--Hb_000431_070 Hb_000035_270 Hb_000035_270 Hb_007827_010--Hb_000035_270 Hb_001053_140 Hb_001053_140 Hb_001329_150--Hb_001053_140 Hb_000419_070 Hb_000419_070 Hb_001329_150--Hb_000419_070 Hb_000571_020 Hb_000571_020 Hb_001329_150--Hb_000571_020 Hb_002000_140 Hb_002000_140 Hb_001329_150--Hb_002000_140 Hb_002303_060 Hb_002303_060 Hb_001329_150--Hb_002303_060 Hb_000189_240 Hb_000189_240 Hb_001329_150--Hb_000189_240 Hb_045003_010 Hb_045003_010 Hb_001353_010--Hb_045003_010 Hb_001489_110 Hb_001489_110 Hb_001353_010--Hb_001489_110 Hb_000808_190 Hb_000808_190 Hb_001353_010--Hb_000808_190 Hb_001353_010--Hb_002303_060 Hb_000563_200 Hb_000563_200 Hb_001353_010--Hb_000563_200 Hb_025098_010 Hb_025098_010 Hb_001353_010--Hb_025098_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.81313 5.25742 22.3406 33.6185 7.88833 10.4688
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.2497 42.7931 21.5281 19.7155 25.1728

CAGE analysis