Hb_001019_190

Information

Type -
Description -
Location Contig1019: 256102-257846
Sequence    

Annotation

kegg
ID rcu:RCOM_0220650
description hypothetical protein
nr
ID XP_002524448.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SEM9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0220650 PE=4 SV=1
Gene Ontology
ID GO:0031072
description plastid transcriptionally active 5 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00944: 256099-257580
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001019_190 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002681_070 0.0735686459 - - PREDICTED: uncharacterized protein LOC105633833 isoform X1 [Jatropha curcas]
3 Hb_000819_080 0.0833568588 - - Plastid-lipid-associated protein, chloroplast precursor, putative [Ricinus communis]
4 Hb_024570_010 0.0849969012 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
5 Hb_000739_310 0.086017667 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
6 Hb_000173_290 0.0878019038 - - guanylate kinase, putative [Ricinus communis]
7 Hb_000796_220 0.0890639704 - - PREDICTED: uncharacterized protein LOC105642644 isoform X3 [Jatropha curcas]
8 Hb_000342_130 0.0903495288 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
9 Hb_008785_040 0.0907684606 - - PREDICTED: DNA repair protein UVH3 [Jatropha curcas]
10 Hb_000574_390 0.0921848747 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Jatropha curcas]
11 Hb_002374_240 0.0932825538 - - nucellin, putative [Ricinus communis]
12 Hb_005496_130 0.0934106337 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X2 [Jatropha curcas]
13 Hb_001243_040 0.0954825864 - - PREDICTED: uncharacterized protein LOC104104316 [Nicotiana tomentosiformis]
14 Hb_000707_050 0.0956543013 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
15 Hb_004369_020 0.0956867426 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
16 Hb_000206_210 0.0958832607 - - PREDICTED: G patch domain-containing protein 11 [Jatropha curcas]
17 Hb_001696_010 0.0959909287 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
18 Hb_002685_210 0.0976970262 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
19 Hb_001675_180 0.0977060782 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
20 Hb_012799_180 0.0977268958 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Vitis vinifera]

Gene co-expression network

sample Hb_001019_190 Hb_001019_190 Hb_002681_070 Hb_002681_070 Hb_001019_190--Hb_002681_070 Hb_000819_080 Hb_000819_080 Hb_001019_190--Hb_000819_080 Hb_024570_010 Hb_024570_010 Hb_001019_190--Hb_024570_010 Hb_000739_310 Hb_000739_310 Hb_001019_190--Hb_000739_310 Hb_000173_290 Hb_000173_290 Hb_001019_190--Hb_000173_290 Hb_000796_220 Hb_000796_220 Hb_001019_190--Hb_000796_220 Hb_008785_040 Hb_008785_040 Hb_002681_070--Hb_008785_040 Hb_006915_070 Hb_006915_070 Hb_002681_070--Hb_006915_070 Hb_000034_040 Hb_000034_040 Hb_002681_070--Hb_000034_040 Hb_002681_070--Hb_000819_080 Hb_005496_130 Hb_005496_130 Hb_002681_070--Hb_005496_130 Hb_000302_180 Hb_000302_180 Hb_000819_080--Hb_000302_180 Hb_003939_050 Hb_003939_050 Hb_000819_080--Hb_003939_050 Hb_030736_100 Hb_030736_100 Hb_000819_080--Hb_030736_100 Hb_004155_010 Hb_004155_010 Hb_000819_080--Hb_004155_010 Hb_024570_010--Hb_000739_310 Hb_007545_030 Hb_007545_030 Hb_024570_010--Hb_007545_030 Hb_028089_010 Hb_028089_010 Hb_024570_010--Hb_028089_010 Hb_002374_240 Hb_002374_240 Hb_024570_010--Hb_002374_240 Hb_024570_010--Hb_000819_080 Hb_000707_050 Hb_000707_050 Hb_000739_310--Hb_000707_050 Hb_000832_020 Hb_000832_020 Hb_000739_310--Hb_000832_020 Hb_000739_310--Hb_007545_030 Hb_000796_040 Hb_000796_040 Hb_000739_310--Hb_000796_040 Hb_000120_790 Hb_000120_790 Hb_000173_290--Hb_000120_790 Hb_000054_090 Hb_000054_090 Hb_000173_290--Hb_000054_090 Hb_000206_210 Hb_000206_210 Hb_000173_290--Hb_000206_210 Hb_000342_130 Hb_000342_130 Hb_000173_290--Hb_000342_130 Hb_002200_080 Hb_002200_080 Hb_000173_290--Hb_002200_080 Hb_000777_040 Hb_000777_040 Hb_000173_290--Hb_000777_040 Hb_000808_230 Hb_000808_230 Hb_000796_220--Hb_000808_230 Hb_004109_090 Hb_004109_090 Hb_000796_220--Hb_004109_090 Hb_000170_210 Hb_000170_210 Hb_000796_220--Hb_000170_210 Hb_001675_180 Hb_001675_180 Hb_000796_220--Hb_001675_180 Hb_085781_010 Hb_085781_010 Hb_000796_220--Hb_085781_010 Hb_000796_220--Hb_000832_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.14398 3.3013 4.06198 4.0944 11.3202 7.73291
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.88782 7.2711 9.69826 5.03503 9.02374

CAGE analysis