Hb_001019_230

Information

Type -
Description -
Location Contig1019: 278656-280866
Sequence    

Annotation

kegg
ID pop:POPTR_0018s00520g
description POPTRDRAFT_578087; pentatricopeptide repeat-containing family protein
nr
ID XP_012078740.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Jatropha curcas]
swissprot
ID Q9LN01
description Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
trembl
ID A0A067KJD0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13295 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at1g08070

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001019_230 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Jatropha curcas]
2 Hb_004096_030 0.0662978282 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
3 Hb_004934_090 0.0685875764 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
4 Hb_154745_010 0.0779398222 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
5 Hb_004447_060 0.0816705939 - - PREDICTED: uncharacterized protein LOC105636329 isoform X2 [Jatropha curcas]
6 Hb_000661_050 0.0823455573 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
7 Hb_001862_190 0.0836432056 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
8 Hb_001258_090 0.0837968614 - - PREDICTED: protein spt2-like [Jatropha curcas]
9 Hb_000134_090 0.0840463358 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
10 Hb_000032_290 0.0848213348 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
11 Hb_000768_040 0.0863615618 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
12 Hb_000977_070 0.0874143257 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
13 Hb_003994_240 0.0874660858 - - Mediator subunit 8 isoform 3 [Theobroma cacao]
14 Hb_001736_040 0.0877367614 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
15 Hb_018838_030 0.0893543229 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001322_190 0.0898917665 - - PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
17 Hb_020000_020 0.0904285522 - - Troponin C, skeletal muscle, putative [Ricinus communis]
18 Hb_002030_030 0.0910382543 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
19 Hb_033642_010 0.0911906203 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
20 Hb_005054_180 0.0913978741 - - coronatine-insensitive 1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_001019_230 Hb_001019_230 Hb_004096_030 Hb_004096_030 Hb_001019_230--Hb_004096_030 Hb_004934_090 Hb_004934_090 Hb_001019_230--Hb_004934_090 Hb_154745_010 Hb_154745_010 Hb_001019_230--Hb_154745_010 Hb_004447_060 Hb_004447_060 Hb_001019_230--Hb_004447_060 Hb_000661_050 Hb_000661_050 Hb_001019_230--Hb_000661_050 Hb_001862_190 Hb_001862_190 Hb_001019_230--Hb_001862_190 Hb_004096_030--Hb_004934_090 Hb_003406_010 Hb_003406_010 Hb_004096_030--Hb_003406_010 Hb_005245_130 Hb_005245_130 Hb_004096_030--Hb_005245_130 Hb_000134_090 Hb_000134_090 Hb_004096_030--Hb_000134_090 Hb_002030_030 Hb_002030_030 Hb_004096_030--Hb_002030_030 Hb_002097_090 Hb_002097_090 Hb_004934_090--Hb_002097_090 Hb_004934_090--Hb_005245_130 Hb_004934_090--Hb_002030_030 Hb_000803_300 Hb_000803_300 Hb_004934_090--Hb_000803_300 Hb_003994_240 Hb_003994_240 Hb_004934_090--Hb_003994_240 Hb_023386_040 Hb_023386_040 Hb_154745_010--Hb_023386_040 Hb_002045_240 Hb_002045_240 Hb_154745_010--Hb_002045_240 Hb_000345_170 Hb_000345_170 Hb_154745_010--Hb_000345_170 Hb_020000_020 Hb_020000_020 Hb_154745_010--Hb_020000_020 Hb_001258_090 Hb_001258_090 Hb_154745_010--Hb_001258_090 Hb_110291_010 Hb_110291_010 Hb_154745_010--Hb_110291_010 Hb_001301_200 Hb_001301_200 Hb_004447_060--Hb_001301_200 Hb_001797_050 Hb_001797_050 Hb_004447_060--Hb_001797_050 Hb_004619_050 Hb_004619_050 Hb_004447_060--Hb_004619_050 Hb_048937_040 Hb_048937_040 Hb_004447_060--Hb_048937_040 Hb_007163_090 Hb_007163_090 Hb_004447_060--Hb_007163_090 Hb_000820_170 Hb_000820_170 Hb_004447_060--Hb_000820_170 Hb_001736_040 Hb_001736_040 Hb_000661_050--Hb_001736_040 Hb_002307_100 Hb_002307_100 Hb_000661_050--Hb_002307_100 Hb_000317_020 Hb_000317_020 Hb_000661_050--Hb_000317_020 Hb_004724_200 Hb_004724_200 Hb_000661_050--Hb_004724_200 Hb_000244_250 Hb_000244_250 Hb_000661_050--Hb_000244_250 Hb_000661_050--Hb_004934_090 Hb_033153_050 Hb_033153_050 Hb_001862_190--Hb_033153_050 Hb_001862_190--Hb_000134_090 Hb_006922_100 Hb_006922_100 Hb_001862_190--Hb_006922_100 Hb_001322_190 Hb_001322_190 Hb_001862_190--Hb_001322_190 Hb_005662_030 Hb_005662_030 Hb_001862_190--Hb_005662_030 Hb_007477_080 Hb_007477_080 Hb_001862_190--Hb_007477_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.55548 0.967753 0.374457 0.452369 1.01136 1.89353
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.19203 1.17642 1.08805 0.60031 0.741202

CAGE analysis