Hb_001021_060

Information

Type -
Description -
Location Contig1021: 41785-42060
Sequence    

Annotation

kegg
ID rcu:RCOM_1439540
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002531869.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9LJI9
description Pentatricopeptide repeat-containing protein At3g28660 OS=Arabidopsis thaliana GN=PCMP-E80 PE=2 SV=1
trembl
ID B9T0V0
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1439540 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001021_060 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_006344_010 0.2138817366 - - -
3 Hb_140572_010 0.2300372188 - - PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Jatropha curcas]
4 Hb_000252_030 0.2698137741 - - Heme-binding protein, putative [Ricinus communis]
5 Hb_003952_140 0.2866493771 - - hypothetical protein POPTR_0001s24960g [Populus trichocarpa]
6 Hb_005914_240 0.2886653589 - - PREDICTED: oxidation resistance protein 1 [Jatropha curcas]
7 Hb_007753_020 0.2956160556 - - -
8 Hb_000544_140 0.3054965056 - - PREDICTED: uncharacterized protein LOC101245866 [Solanum lycopersicum]
9 Hb_123521_010 0.308136521 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
10 Hb_001195_390 0.3105558893 - - PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Populus euphratica]
11 Hb_000445_080 0.3113591136 transcription factor TF Family: MIKC PREDICTED: floral homeotic protein PMADS 2 [Jatropha curcas]
12 Hb_010626_020 0.3181632529 - - -
13 Hb_008147_010 0.3188410251 - - hypothetical protein, partial [Pseudomonas fluorescens]
14 Hb_003446_040 0.3280520512 - - -
15 Hb_179112_010 0.329780192 - - PREDICTED: uncharacterized protein LOC105800955 [Gossypium raimondii]
16 Hb_002243_040 0.333354949 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00227 [Jatropha curcas]
17 Hb_015707_010 0.3458266253 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
18 Hb_009265_020 0.3490332098 - - UDP-glucosyltransferase, putative [Ricinus communis]
19 Hb_001277_310 0.3496622927 - - PREDICTED: putative ribonuclease H protein At1g65750 [Phoenix dactylifera]
20 Hb_004079_020 0.3500380242 - - hypothetical protein glysoja_031528 [Glycine soja]

Gene co-expression network

sample Hb_001021_060 Hb_001021_060 Hb_006344_010 Hb_006344_010 Hb_001021_060--Hb_006344_010 Hb_140572_010 Hb_140572_010 Hb_001021_060--Hb_140572_010 Hb_000252_030 Hb_000252_030 Hb_001021_060--Hb_000252_030 Hb_003952_140 Hb_003952_140 Hb_001021_060--Hb_003952_140 Hb_005914_240 Hb_005914_240 Hb_001021_060--Hb_005914_240 Hb_007753_020 Hb_007753_020 Hb_001021_060--Hb_007753_020 Hb_006344_010--Hb_140572_010 Hb_001195_390 Hb_001195_390 Hb_006344_010--Hb_001195_390 Hb_004413_030 Hb_004413_030 Hb_006344_010--Hb_004413_030 Hb_001277_310 Hb_001277_310 Hb_006344_010--Hb_001277_310 Hb_135624_010 Hb_135624_010 Hb_006344_010--Hb_135624_010 Hb_140572_010--Hb_007753_020 Hb_140572_010--Hb_001195_390 Hb_000445_080 Hb_000445_080 Hb_140572_010--Hb_000445_080 Hb_123521_010 Hb_123521_010 Hb_140572_010--Hb_123521_010 Hb_108886_010 Hb_108886_010 Hb_000252_030--Hb_108886_010 Hb_000252_030--Hb_003952_140 Hb_021419_050 Hb_021419_050 Hb_000252_030--Hb_021419_050 Hb_001338_060 Hb_001338_060 Hb_000252_030--Hb_001338_060 Hb_000042_140 Hb_000042_140 Hb_000252_030--Hb_000042_140 Hb_179112_010 Hb_179112_010 Hb_003952_140--Hb_179112_010 Hb_003952_140--Hb_123521_010 Hb_003952_140--Hb_108886_010 Hb_183612_030 Hb_183612_030 Hb_003952_140--Hb_183612_030 Hb_004079_020 Hb_004079_020 Hb_005914_240--Hb_004079_020 Hb_005914_240--Hb_006344_010 Hb_000544_140 Hb_000544_140 Hb_005914_240--Hb_000544_140 Hb_005914_240--Hb_140572_010 Hb_063912_010 Hb_063912_010 Hb_005914_240--Hb_063912_010 Hb_000951_040 Hb_000951_040 Hb_007753_020--Hb_000951_040 Hb_011640_020 Hb_011640_020 Hb_007753_020--Hb_011640_020 Hb_007753_020--Hb_006344_010 Hb_007753_020--Hb_001195_390 Hb_013925_010 Hb_013925_010 Hb_007753_020--Hb_013925_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.68132 0.38756 0 0 0 3.4028
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 2.50046 0.172018 0

CAGE analysis