Hb_001021_080

Information

Type -
Description -
Location Contig1021: 56445-60812
Sequence    

Annotation

kegg
ID rcu:RCOM_1439510
description WD-repeat protein, putative
nr
ID XP_012082714.1
description PREDICTED: autophagy-related protein 18a [Jatropha curcas]
swissprot
ID Q93VB2
description Autophagy-related protein 18a OS=Arabidopsis thaliana GN=ATG18A PE=1 SV=1
trembl
ID A0A067JW43
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13893 PE=4 SV=1
Gene Ontology
ID GO:0005829
description autophagy-related protein 18a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00971: 56533-60669 , PASA_asmbl_00972: 58645-59087
cDNA
(Sanger)
(ID:Location)		 034_H17.ab1: 59908-60669

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001021_080 0.0 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
2 Hb_172632_110 0.0742515035 - - PREDICTED: pumilio homolog 5 [Jatropha curcas]
3 Hb_008147_070 0.0841365622 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
4 Hb_002391_210 0.0895092379 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
5 Hb_000739_100 0.0897919636 - - ku P80 DNA helicase, putative [Ricinus communis]
6 Hb_006831_040 0.0921978188 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
7 Hb_001157_090 0.0940382045 - - PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Jatropha curcas]
8 Hb_000866_170 0.0977073831 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_001761_130 0.0986112311 - - PREDICTED: uncharacterized protein LOC105646118 isoform X1 [Jatropha curcas]
10 Hb_000152_660 0.099197161 - - PREDICTED: BAG family molecular chaperone regulator 7 [Jatropha curcas]
11 Hb_001018_050 0.0998075452 - - PREDICTED: aspartate aminotransferase, cytoplasmic [Jatropha curcas]
12 Hb_000140_480 0.0998749288 - - PREDICTED: uncharacterized protein LOC105637350 [Jatropha curcas]
13 Hb_003994_060 0.1009015733 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
14 Hb_004994_220 0.1026654322 - - PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]
15 Hb_000185_030 0.1033328476 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
16 Hb_005731_130 0.1039261352 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
17 Hb_000245_040 0.1050732414 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
18 Hb_000556_160 0.1068226148 - - PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Jatropha curcas]
19 Hb_000002_010 0.1070300993 - - PREDICTED: uncharacterized protein LOC105641567 [Jatropha curcas]
20 Hb_033772_030 0.1076767009 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]

Gene co-expression network

sample Hb_001021_080 Hb_001021_080 Hb_172632_110 Hb_172632_110 Hb_001021_080--Hb_172632_110 Hb_008147_070 Hb_008147_070 Hb_001021_080--Hb_008147_070 Hb_002391_210 Hb_002391_210 Hb_001021_080--Hb_002391_210 Hb_000739_100 Hb_000739_100 Hb_001021_080--Hb_000739_100 Hb_006831_040 Hb_006831_040 Hb_001021_080--Hb_006831_040 Hb_001157_090 Hb_001157_090 Hb_001021_080--Hb_001157_090 Hb_001761_130 Hb_001761_130 Hb_172632_110--Hb_001761_130 Hb_172632_110--Hb_006831_040 Hb_010174_110 Hb_010174_110 Hb_172632_110--Hb_010174_110 Hb_172632_110--Hb_002391_210 Hb_000002_010 Hb_000002_010 Hb_172632_110--Hb_000002_010 Hb_119494_010 Hb_119494_010 Hb_008147_070--Hb_119494_010 Hb_077562_030 Hb_077562_030 Hb_008147_070--Hb_077562_030 Hb_109002_020 Hb_109002_020 Hb_008147_070--Hb_109002_020 Hb_002400_410 Hb_002400_410 Hb_008147_070--Hb_002400_410 Hb_008147_070--Hb_172632_110 Hb_002391_210--Hb_002400_410 Hb_002391_210--Hb_001761_130 Hb_007747_080 Hb_007747_080 Hb_002391_210--Hb_007747_080 Hb_005081_020 Hb_005081_020 Hb_002391_210--Hb_005081_020 Hb_000739_100--Hb_001157_090 Hb_002900_090 Hb_002900_090 Hb_000739_100--Hb_002900_090 Hb_005000_260 Hb_005000_260 Hb_000739_100--Hb_005000_260 Hb_000703_150 Hb_000703_150 Hb_000739_100--Hb_000703_150 Hb_006922_010 Hb_006922_010 Hb_000739_100--Hb_006922_010 Hb_002686_030 Hb_002686_030 Hb_000739_100--Hb_002686_030 Hb_006831_040--Hb_001761_130 Hb_006831_040--Hb_010174_110 Hb_002740_110 Hb_002740_110 Hb_006831_040--Hb_002740_110 Hb_004994_220 Hb_004994_220 Hb_006831_040--Hb_004994_220 Hb_004117_310 Hb_004117_310 Hb_006831_040--Hb_004117_310 Hb_000028_180 Hb_000028_180 Hb_001157_090--Hb_000028_180 Hb_001252_120 Hb_001252_120 Hb_001157_090--Hb_001252_120 Hb_002784_020 Hb_002784_020 Hb_001157_090--Hb_002784_020 Hb_004324_130 Hb_004324_130 Hb_001157_090--Hb_004324_130 Hb_017862_020 Hb_017862_020 Hb_001157_090--Hb_017862_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.2556 38.0568 13.1009 23.2824 24.9997 22.1886
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.6368 24.7038 39.4913 53.4472 14.7232

CAGE analysis