Hb_001021_130

Information

Type -
Description -
Location Contig1021: 127471-142614
Sequence    

Annotation

kegg
ID tcc:TCM_004570
description hypothetical protein
nr
ID XP_012082707.1
description PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K8H2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13880 PE=4 SV=1
Gene Ontology
ID GO:0005488
description arginine-glutamic acid dipeptide repeats

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00979: 142051-142211 , PASA_asmbl_00980: 142222-142463
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001021_130 0.0 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
2 Hb_010174_060 0.081831245 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
3 Hb_003647_060 0.1031245949 - - PREDICTED: uncharacterized protein LOC105646679 isoform X2 [Jatropha curcas]
4 Hb_007508_090 0.1126721233 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
5 Hb_074783_010 0.1155375826 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]
6 Hb_000189_560 0.1208370646 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
7 Hb_001969_090 0.1221252371 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
8 Hb_000343_130 0.1224195495 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
9 Hb_000111_360 0.122624034 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000317_290 0.1227927533 - - PREDICTED: VQ motif-containing protein 31 [Jatropha curcas]
11 Hb_000227_120 0.1233417753 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006615_020 0.123762649 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
13 Hb_001226_040 0.1244623228 - - protein with unknown function [Ricinus communis]
14 Hb_000329_630 0.1251440226 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
15 Hb_031421_020 0.1263667047 - - ADP-ribose pyrophosphatase, putative [Ricinus communis]
16 Hb_002835_180 0.1266434254 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_002218_010 0.1271123621 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
18 Hb_000419_060 0.1289216727 - - PREDICTED: patatin-like protein 6 [Jatropha curcas]
19 Hb_000592_020 0.129129115 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
20 Hb_034406_030 0.1296523526 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Musa acuminata subsp. malaccensis]

Gene co-expression network

sample Hb_001021_130 Hb_001021_130 Hb_010174_060 Hb_010174_060 Hb_001021_130--Hb_010174_060 Hb_003647_060 Hb_003647_060 Hb_001021_130--Hb_003647_060 Hb_007508_090 Hb_007508_090 Hb_001021_130--Hb_007508_090 Hb_074783_010 Hb_074783_010 Hb_001021_130--Hb_074783_010 Hb_000189_560 Hb_000189_560 Hb_001021_130--Hb_000189_560 Hb_001969_090 Hb_001969_090 Hb_001021_130--Hb_001969_090 Hb_000069_600 Hb_000069_600 Hb_010174_060--Hb_000069_600 Hb_006615_020 Hb_006615_020 Hb_010174_060--Hb_006615_020 Hb_000789_220 Hb_000789_220 Hb_010174_060--Hb_000789_220 Hb_000010_460 Hb_000010_460 Hb_010174_060--Hb_000010_460 Hb_034406_030 Hb_034406_030 Hb_010174_060--Hb_034406_030 Hb_003647_060--Hb_074783_010 Hb_003647_060--Hb_007508_090 Hb_000646_050 Hb_000646_050 Hb_003647_060--Hb_000646_050 Hb_005396_150 Hb_005396_150 Hb_003647_060--Hb_005396_150 Hb_000710_060 Hb_000710_060 Hb_003647_060--Hb_000710_060 Hb_000230_390 Hb_000230_390 Hb_007508_090--Hb_000230_390 Hb_003371_090 Hb_003371_090 Hb_007508_090--Hb_003371_090 Hb_007532_030 Hb_007532_030 Hb_007508_090--Hb_007532_030 Hb_007508_090--Hb_000710_060 Hb_007508_090--Hb_000189_560 Hb_000213_100 Hb_000213_100 Hb_007508_090--Hb_000213_100 Hb_002577_010 Hb_002577_010 Hb_074783_010--Hb_002577_010 Hb_000592_020 Hb_000592_020 Hb_074783_010--Hb_000592_020 Hb_001053_090 Hb_001053_090 Hb_074783_010--Hb_001053_090 Hb_034688_020 Hb_034688_020 Hb_074783_010--Hb_034688_020 Hb_000866_220 Hb_000866_220 Hb_000189_560--Hb_000866_220 Hb_000189_560--Hb_007532_030 Hb_000185_030 Hb_000185_030 Hb_000189_560--Hb_000185_030 Hb_000189_560--Hb_000710_060 Hb_004355_020 Hb_004355_020 Hb_000189_560--Hb_004355_020 Hb_007747_200 Hb_007747_200 Hb_001969_090--Hb_007747_200 Hb_000317_280 Hb_000317_280 Hb_001969_090--Hb_000317_280 Hb_000575_150 Hb_000575_150 Hb_001969_090--Hb_000575_150 Hb_003687_240 Hb_003687_240 Hb_001969_090--Hb_003687_240 Hb_010883_090 Hb_010883_090 Hb_001969_090--Hb_010883_090 Hb_000805_020 Hb_000805_020 Hb_001969_090--Hb_000805_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.18414 3.10209 1.0282 1.09977 1.10203 1.5877
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.44118 2.76544 4.4394 2.88389 1.48789

CAGE analysis