Hb_001021_150

Information

Type -
Description -
Location Contig1021: 154744-162559
Sequence    

Annotation

kegg
ID pop:POPTR_0002s20980g
description hypothetical protein
nr
ID XP_012082705.1
description PREDICTED: metal tolerance protein C1 [Jatropha curcas]
swissprot
ID Q8L725
description Metal tolerance protein C1 OS=Arabidopsis thaliana GN=MTPC1 PE=2 SV=1
trembl
ID A0A067JZ72
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13879 PE=4 SV=1
Gene Ontology
ID GO:0016021
description metal tolerance protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00982: 154683-156117 , PASA_asmbl_00983: 156139-159988 , PASA_asmbl_00984: 156993-159988 , PASA_asmbl_00986: 160742-161097
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001021_150 0.0 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
2 Hb_002592_060 0.0465796879 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008847_030 0.0503486531 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
4 Hb_001946_400 0.0512682403 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
5 Hb_000035_470 0.0549927973 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
6 Hb_006831_140 0.0556285271 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
7 Hb_000905_110 0.0566753822 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
8 Hb_004846_220 0.0607180426 - - PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]
9 Hb_000075_040 0.0614166091 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
10 Hb_123915_040 0.0623910208 - - PREDICTED: uncharacterized protein LOC105633952 [Jatropha curcas]
11 Hb_000347_430 0.0630992113 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]
12 Hb_002553_060 0.0636151972 - - PREDICTED: electron transfer flavoprotein subunit beta, mitochondrial [Jatropha curcas]
13 Hb_002263_020 0.0639663206 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
14 Hb_000138_100 0.0640661576 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
15 Hb_004254_090 0.0641039691 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
16 Hb_014834_150 0.0646992691 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_007390_010 0.0649737893 - - catalytic, putative [Ricinus communis]
18 Hb_000165_040 0.0656788618 - - hypothetical protein JCGZ_01206 [Jatropha curcas]
19 Hb_000417_130 0.0662060023 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
20 Hb_156279_020 0.0686824182 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]

Gene co-expression network

sample Hb_001021_150 Hb_001021_150 Hb_002592_060 Hb_002592_060 Hb_001021_150--Hb_002592_060 Hb_008847_030 Hb_008847_030 Hb_001021_150--Hb_008847_030 Hb_001946_400 Hb_001946_400 Hb_001021_150--Hb_001946_400 Hb_000035_470 Hb_000035_470 Hb_001021_150--Hb_000035_470 Hb_006831_140 Hb_006831_140 Hb_001021_150--Hb_006831_140 Hb_000905_110 Hb_000905_110 Hb_001021_150--Hb_000905_110 Hb_004846_220 Hb_004846_220 Hb_002592_060--Hb_004846_220 Hb_002263_020 Hb_002263_020 Hb_002592_060--Hb_002263_020 Hb_004254_090 Hb_004254_090 Hb_002592_060--Hb_004254_090 Hb_000317_050 Hb_000317_050 Hb_002592_060--Hb_000317_050 Hb_006483_110 Hb_006483_110 Hb_002592_060--Hb_006483_110 Hb_003938_090 Hb_003938_090 Hb_008847_030--Hb_003938_090 Hb_003416_010 Hb_003416_010 Hb_008847_030--Hb_003416_010 Hb_008847_030--Hb_000905_110 Hb_000621_010 Hb_000621_010 Hb_008847_030--Hb_000621_010 Hb_002641_060 Hb_002641_060 Hb_008847_030--Hb_002641_060 Hb_014834_150 Hb_014834_150 Hb_001946_400--Hb_014834_150 Hb_001599_040 Hb_001599_040 Hb_001946_400--Hb_001599_040 Hb_002553_060 Hb_002553_060 Hb_001946_400--Hb_002553_060 Hb_001946_400--Hb_008847_030 Hb_007416_340 Hb_007416_340 Hb_001946_400--Hb_007416_340 Hb_004319_080 Hb_004319_080 Hb_000035_470--Hb_004319_080 Hb_015807_050 Hb_015807_050 Hb_000035_470--Hb_015807_050 Hb_168978_030 Hb_168978_030 Hb_000035_470--Hb_168978_030 Hb_002073_190 Hb_002073_190 Hb_000035_470--Hb_002073_190 Hb_000976_140 Hb_000976_140 Hb_000035_470--Hb_000976_140 Hb_000708_030 Hb_000708_030 Hb_006831_140--Hb_000708_030 Hb_000078_120 Hb_000078_120 Hb_006831_140--Hb_000078_120 Hb_093458_040 Hb_093458_040 Hb_006831_140--Hb_093458_040 Hb_001876_050 Hb_001876_050 Hb_006831_140--Hb_001876_050 Hb_002078_350 Hb_002078_350 Hb_006831_140--Hb_002078_350 Hb_000336_210 Hb_000336_210 Hb_000905_110--Hb_000336_210 Hb_000905_110--Hb_014834_150 Hb_123915_040 Hb_123915_040 Hb_000905_110--Hb_123915_040 Hb_021419_030 Hb_021419_030 Hb_000905_110--Hb_021419_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.47675 3.11639 4.27623 4.08867 4.42583 4.31347
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.1218 5.41143 3.28456 4.90854 5.25129

CAGE analysis