Hb_001021_170

Information

Type -
Description -
Location Contig1021: 184022-195234
Sequence    

Annotation

kegg
ID rcu:RCOM_0555330
description hypothetical protein
nr
ID XP_012082699.1
description PREDICTED: uncharacterized protein LOC105642474 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JVW2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13877 PE=4 SV=1
Gene Ontology
ID GO:0008270
description cw-type zinc isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00989: 184058-185532 , PASA_asmbl_00990: 186589-186723 , PASA_asmbl_00993: 194804-195239
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001021_170 0.0 - - PREDICTED: uncharacterized protein LOC105642474 [Jatropha curcas]
2 Hb_015807_070 0.0622543641 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
3 Hb_004355_020 0.064457861 - - PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Jatropha curcas]
4 Hb_000768_040 0.0680719394 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
5 Hb_045793_010 0.0685564696 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]
6 Hb_006847_040 0.0721416353 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 1 [Jatropha curcas]
7 Hb_007416_180 0.0727822636 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
8 Hb_011491_010 0.0734663849 - - Protein YME1, putative [Ricinus communis]
9 Hb_000574_540 0.074606256 - - ATP binding protein, putative [Ricinus communis]
10 Hb_004785_060 0.074673088 - - PREDICTED: SKP1-interacting partner 15 [Jatropha curcas]
11 Hb_004684_010 0.0807947642 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
12 Hb_011671_430 0.0826783881 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
13 Hb_003055_060 0.0833832909 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105649487 isoform X1 [Jatropha curcas]
14 Hb_000336_250 0.0843273222 transcription factor TF Family: mTERF hypothetical protein B456_002G027700 [Gossypium raimondii]
15 Hb_076693_020 0.0863271849 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
16 Hb_007254_070 0.0871257881 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
17 Hb_000229_020 0.0888457691 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03540 [Jatropha curcas]
18 Hb_000174_220 0.0894313352 - - cohesin subunit rad21, putative [Ricinus communis]
19 Hb_002603_120 0.0902156794 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
20 Hb_000859_060 0.0908710661 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]

Gene co-expression network

sample Hb_001021_170 Hb_001021_170 Hb_015807_070 Hb_015807_070 Hb_001021_170--Hb_015807_070 Hb_004355_020 Hb_004355_020 Hb_001021_170--Hb_004355_020 Hb_000768_040 Hb_000768_040 Hb_001021_170--Hb_000768_040 Hb_045793_010 Hb_045793_010 Hb_001021_170--Hb_045793_010 Hb_006847_040 Hb_006847_040 Hb_001021_170--Hb_006847_040 Hb_007416_180 Hb_007416_180 Hb_001021_170--Hb_007416_180 Hb_000174_220 Hb_000174_220 Hb_015807_070--Hb_000174_220 Hb_015807_070--Hb_007416_180 Hb_004684_010 Hb_004684_010 Hb_015807_070--Hb_004684_010 Hb_008500_010 Hb_008500_010 Hb_015807_070--Hb_008500_010 Hb_011491_010 Hb_011491_010 Hb_015807_070--Hb_011491_010 Hb_007254_070 Hb_007254_070 Hb_004355_020--Hb_007254_070 Hb_011671_430 Hb_011671_430 Hb_004355_020--Hb_011671_430 Hb_000629_010 Hb_000629_010 Hb_004355_020--Hb_000629_010 Hb_011218_040 Hb_011218_040 Hb_004355_020--Hb_011218_040 Hb_006788_020 Hb_006788_020 Hb_004355_020--Hb_006788_020 Hb_003464_060 Hb_003464_060 Hb_000768_040--Hb_003464_060 Hb_002603_120 Hb_002603_120 Hb_000768_040--Hb_002603_120 Hb_001226_030 Hb_001226_030 Hb_000768_040--Hb_001226_030 Hb_000768_040--Hb_004684_010 Hb_000768_040--Hb_004355_020 Hb_000025_360 Hb_000025_360 Hb_045793_010--Hb_000025_360 Hb_000827_070 Hb_000827_070 Hb_045793_010--Hb_000827_070 Hb_076693_020 Hb_076693_020 Hb_045793_010--Hb_076693_020 Hb_045793_010--Hb_006847_040 Hb_045793_010--Hb_000174_220 Hb_006847_040--Hb_000025_360 Hb_006847_040--Hb_076693_020 Hb_006847_040--Hb_000174_220 Hb_006847_040--Hb_015807_070 Hb_000538_270 Hb_000538_270 Hb_007416_180--Hb_000538_270 Hb_031527_040 Hb_031527_040 Hb_007416_180--Hb_031527_040 Hb_007416_180--Hb_004684_010 Hb_000181_070 Hb_000181_070 Hb_007416_180--Hb_000181_070 Hb_001248_060 Hb_001248_060 Hb_007416_180--Hb_001248_060 Hb_001409_020 Hb_001409_020 Hb_007416_180--Hb_001409_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.174 17.7304 5.31874 5.74575 11.3967 13.8885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.3395 9.7694 12.9863 8.04711 7.54253

CAGE analysis