Hb_001021_180

Information

Type -
Description -
Location Contig1021: 221374-222474
Sequence    

Annotation

kegg
ID mdm:103402486
description probable LRR receptor-like serine/threonine-protein kinase At4g08850
nr
ID XP_009591510.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Nicotiana tomentosiformis]
swissprot
ID Q9FXF2
description Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1
trembl
ID U7DSK6
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_2697s002001g PE=4 SV=1
Gene Ontology
ID GO:0016301
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001021_180 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Nicotiana tomentosiformis]
2 Hb_009393_190 0.2733658204 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]
3 Hb_008442_010 0.2857679221 - - PREDICTED: nudix hydrolase 16, mitochondrial-like [Citrus sinensis]
4 Hb_004931_080 0.2913532452 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT5-like [Jatropha curcas]
5 Hb_000326_050 0.2983893728 - - Phenylalanyl-tRNA synthetase alpha chain isoform 2 [Theobroma cacao]
6 Hb_000157_080 0.3042491981 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
7 Hb_089685_010 0.3058002159 - - -
8 Hb_000529_100 0.3095408528 - - hypothetical protein POPTR_0009s05980g [Populus trichocarpa]
9 Hb_000959_310 0.3097977713 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
10 Hb_001916_080 0.310416415 - - PREDICTED: uncharacterized protein LOC105641552 [Jatropha curcas]
11 Hb_000442_090 0.3137669078 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Jatropha curcas]
12 Hb_020035_020 0.3163148148 - - PREDICTED: uncharacterized protein LOC105631020 [Jatropha curcas]
13 Hb_000092_130 0.3174680615 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Jatropha curcas]
14 Hb_005048_040 0.317843025 - - PREDICTED: endonuclease 1 [Jatropha curcas]
15 Hb_001019_080 0.3208258155 - - hypothetical protein JCGZ_13280 [Jatropha curcas]
16 Hb_004243_010 0.3220160408 - - hypothetical protein JCGZ_01580 [Jatropha curcas]
17 Hb_007333_010 0.3230359977 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000709_060 0.3280863332 - - PREDICTED: abscisic-aldehyde oxidase-like isoform X5 [Populus euphratica]
19 Hb_000656_340 0.3281309429 - - hypothetical protein JCGZ_24686 [Jatropha curcas]
20 Hb_002301_360 0.3321159853 - - hypothetical protein CICLE_v10017252mg [Citrus clementina]

Gene co-expression network

sample Hb_001021_180 Hb_001021_180 Hb_009393_190 Hb_009393_190 Hb_001021_180--Hb_009393_190 Hb_008442_010 Hb_008442_010 Hb_001021_180--Hb_008442_010 Hb_004931_080 Hb_004931_080 Hb_001021_180--Hb_004931_080 Hb_000326_050 Hb_000326_050 Hb_001021_180--Hb_000326_050 Hb_000157_080 Hb_000157_080 Hb_001021_180--Hb_000157_080 Hb_089685_010 Hb_089685_010 Hb_001021_180--Hb_089685_010 Hb_009393_190--Hb_000157_080 Hb_009615_020 Hb_009615_020 Hb_009393_190--Hb_009615_020 Hb_000574_280 Hb_000574_280 Hb_009393_190--Hb_000574_280 Hb_100743_010 Hb_100743_010 Hb_009393_190--Hb_100743_010 Hb_001437_090 Hb_001437_090 Hb_009393_190--Hb_001437_090 Hb_000959_310 Hb_000959_310 Hb_009393_190--Hb_000959_310 Hb_013492_010 Hb_013492_010 Hb_008442_010--Hb_013492_010 Hb_000025_100 Hb_000025_100 Hb_008442_010--Hb_000025_100 Hb_001405_130 Hb_001405_130 Hb_008442_010--Hb_001405_130 Hb_029888_020 Hb_029888_020 Hb_008442_010--Hb_029888_020 Hb_121550_010 Hb_121550_010 Hb_008442_010--Hb_121550_010 Hb_147123_010 Hb_147123_010 Hb_008442_010--Hb_147123_010 Hb_004931_080--Hb_000959_310 Hb_002301_360 Hb_002301_360 Hb_004931_080--Hb_002301_360 Hb_001140_070 Hb_001140_070 Hb_004931_080--Hb_001140_070 Hb_009780_080 Hb_009780_080 Hb_004931_080--Hb_009780_080 Hb_006970_080 Hb_006970_080 Hb_004931_080--Hb_006970_080 Hb_000510_330 Hb_000510_330 Hb_004931_080--Hb_000510_330 Hb_000094_330 Hb_000094_330 Hb_000326_050--Hb_000094_330 Hb_004897_020 Hb_004897_020 Hb_000326_050--Hb_004897_020 Hb_000567_030 Hb_000567_030 Hb_000326_050--Hb_000567_030 Hb_000054_100 Hb_000054_100 Hb_000326_050--Hb_000054_100 Hb_004297_070 Hb_004297_070 Hb_000326_050--Hb_004297_070 Hb_002876_240 Hb_002876_240 Hb_000326_050--Hb_002876_240 Hb_150766_020 Hb_150766_020 Hb_000157_080--Hb_150766_020 Hb_000994_110 Hb_000994_110 Hb_000157_080--Hb_000994_110 Hb_179812_010 Hb_179812_010 Hb_000157_080--Hb_179812_010 Hb_000243_040 Hb_000243_040 Hb_000157_080--Hb_000243_040 Hb_000136_180 Hb_000136_180 Hb_000157_080--Hb_000136_180 Hb_001373_150 Hb_001373_150 Hb_089685_010--Hb_001373_150 Hb_000576_010 Hb_000576_010 Hb_089685_010--Hb_000576_010 Hb_000709_060 Hb_000709_060 Hb_089685_010--Hb_000709_060 Hb_000220_050 Hb_000220_050 Hb_089685_010--Hb_000220_050 Hb_012779_100 Hb_012779_100 Hb_089685_010--Hb_012779_100 Hb_000816_130 Hb_000816_130 Hb_089685_010--Hb_000816_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0508753 0 0.0381979 0.0433518 0 0.0966278
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.116768 0.0459134 0 0.0555563 0

CAGE analysis