Hb_001022_020

Information

Type transcription factor
Description TF Family: NAC
Location Contig1022: 13099-15688
Sequence    

Annotation

kegg
ID rcu:RCOM_1259530
description NAC domain-containing protein, putative
nr
ID AGL39694.1
description NAC transcription factor 038 [Jatropha curcas]
swissprot
ID Q9FMR3
description NAC domain-containing protein 90 OS=Arabidopsis thaliana GN=NAC090 PE=2 SV=1
trembl
ID R4NFV0
description NAC transcription factor 038 OS=Jatropha curcas GN=JCGZ_06792 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001022_020 0.0 transcription factor TF Family: NAC NAC transcription factor 038 [Jatropha curcas]
2 Hb_001396_040 0.1665373389 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
3 Hb_002374_200 0.1666412975 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
4 Hb_003038_110 0.1681430981 - - hypothetical protein JCGZ_14961 [Jatropha curcas]
5 Hb_000042_020 0.1758728767 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
6 Hb_006120_120 0.1848623631 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000668_100 0.1945440523 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
8 Hb_000134_260 0.1948511432 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
9 Hb_008878_010 0.1965761568 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2-like [Populus euphratica]
10 Hb_005599_020 0.2002053918 - - Protein MLO, putative [Ricinus communis]
11 Hb_003058_030 0.2015040906 - - calcium-dependent protein kinase, putative [Ricinus communis]
12 Hb_001001_010 0.202202057 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
13 Hb_001951_210 0.2056094493 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000046_520 0.205816479 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
15 Hb_004551_010 0.2071585081 - - tryptophan synthase beta chain, putative [Ricinus communis]
16 Hb_000866_430 0.2078165337 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB6 [Jatropha curcas]
17 Hb_001143_200 0.2079231301 transcription factor TF Family: NAC NAC domain protein [Glycine max]
18 Hb_001007_090 0.2090158592 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas]
19 Hb_000322_160 0.2117730249 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-2-like [Jatropha curcas]
20 Hb_116420_050 0.2136195056 - - PREDICTED: ACT domain-containing protein ACR1 [Jatropha curcas]

Gene co-expression network

sample Hb_001022_020 Hb_001022_020 Hb_001396_040 Hb_001396_040 Hb_001022_020--Hb_001396_040 Hb_002374_200 Hb_002374_200 Hb_001022_020--Hb_002374_200 Hb_003038_110 Hb_003038_110 Hb_001022_020--Hb_003038_110 Hb_000042_020 Hb_000042_020 Hb_001022_020--Hb_000042_020 Hb_006120_120 Hb_006120_120 Hb_001022_020--Hb_006120_120 Hb_000668_100 Hb_000668_100 Hb_001022_020--Hb_000668_100 Hb_004846_230 Hb_004846_230 Hb_001396_040--Hb_004846_230 Hb_000388_040 Hb_000388_040 Hb_001396_040--Hb_000388_040 Hb_006788_090 Hb_006788_090 Hb_001396_040--Hb_006788_090 Hb_000134_260 Hb_000134_260 Hb_001396_040--Hb_000134_260 Hb_001001_010 Hb_001001_010 Hb_001396_040--Hb_001001_010 Hb_000349_170 Hb_000349_170 Hb_001396_040--Hb_000349_170 Hb_002400_020 Hb_002400_020 Hb_002374_200--Hb_002400_020 Hb_004551_010 Hb_004551_010 Hb_002374_200--Hb_004551_010 Hb_002374_200--Hb_000134_260 Hb_000454_080 Hb_000454_080 Hb_002374_200--Hb_000454_080 Hb_001660_080 Hb_001660_080 Hb_002374_200--Hb_001660_080 Hb_000322_160 Hb_000322_160 Hb_002374_200--Hb_000322_160 Hb_000046_520 Hb_000046_520 Hb_003038_110--Hb_000046_520 Hb_015531_010 Hb_015531_010 Hb_003038_110--Hb_015531_010 Hb_003038_110--Hb_001396_040 Hb_003038_110--Hb_000134_260 Hb_003038_110--Hb_002374_200 Hb_001143_200 Hb_001143_200 Hb_000042_020--Hb_001143_200 Hb_000280_100 Hb_000280_100 Hb_000042_020--Hb_000280_100 Hb_116420_050 Hb_116420_050 Hb_000042_020--Hb_116420_050 Hb_027065_010 Hb_027065_010 Hb_000042_020--Hb_027065_010 Hb_007101_250 Hb_007101_250 Hb_000042_020--Hb_007101_250 Hb_127372_010 Hb_127372_010 Hb_000042_020--Hb_127372_010 Hb_001581_040 Hb_001581_040 Hb_006120_120--Hb_001581_040 Hb_005375_060 Hb_005375_060 Hb_006120_120--Hb_005375_060 Hb_000111_240 Hb_000111_240 Hb_006120_120--Hb_000111_240 Hb_006120_120--Hb_002374_200 Hb_001951_210 Hb_001951_210 Hb_006120_120--Hb_001951_210 Hb_005694_100 Hb_005694_100 Hb_000668_100--Hb_005694_100 Hb_008059_040 Hb_008059_040 Hb_000668_100--Hb_008059_040 Hb_005511_080 Hb_005511_080 Hb_000668_100--Hb_005511_080 Hb_001241_020 Hb_001241_020 Hb_000668_100--Hb_001241_020 Hb_001218_060 Hb_001218_060 Hb_000668_100--Hb_001218_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.32476 4.05921 0.400171 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0687405 0.432396 0 0.153214 0.54173

CAGE analysis