Hb_001022_030

Information

Type -
Description -
Location Contig1022: 45770-53423
Sequence    

Annotation

kegg
ID rcu:RCOM_0293470
description sorting nexin 3, putative
nr
ID XP_012073004.1
description PREDICTED: sorting nexin 1 [Jatropha curcas]
swissprot
ID Q9FG38
description Sorting nexin 1 OS=Arabidopsis thaliana GN=SNX1 PE=1 SV=1
trembl
ID A0A067KYJ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06789 PE=4 SV=1
Gene Ontology
ID GO:0005771
description sorting nexin 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01019: 45901-51275 , PASA_asmbl_01021: 46122-51281 , PASA_asmbl_01022: 51520-53439
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001022_030 0.0 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
2 Hb_002874_180 0.071906124 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
3 Hb_156850_100 0.08898019 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
4 Hb_003728_100 0.0907589592 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
5 Hb_000539_050 0.0919783127 - - bile acid:sodium symporter, putative [Ricinus communis]
6 Hb_005539_010 0.0942404212 - - PREDICTED: uncharacterized protein LOC105644585 [Jatropha curcas]
7 Hb_009225_020 0.0946787722 - - PREDICTED: uncharacterized protein LOC105638232 [Jatropha curcas]
8 Hb_029351_010 0.0949055691 - - PREDICTED: HD domain-containing protein 2 isoform X1 [Jatropha curcas]
9 Hb_000907_180 0.0957131919 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]
10 Hb_000061_180 0.0957253724 - - exonuclease, putative [Ricinus communis]
11 Hb_000003_780 0.0969042337 - - hexokinase [Manihot esculenta]
12 Hb_012305_100 0.0980308345 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: dihydrolipoyl dehydrogenase 2, chloroplastic-like [Jatropha curcas]
13 Hb_001882_010 0.1018182646 - - -
14 Hb_107879_010 0.1040308743 - - phosphoglycerate mutase, putative [Ricinus communis]
15 Hb_006538_120 0.1041408005 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
16 Hb_004452_120 0.1048103194 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
17 Hb_003752_070 0.1048573493 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
18 Hb_000207_300 0.1060584504 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
19 Hb_000291_180 0.1075950537 - - PREDICTED: meiotically up-regulated gene 185 protein [Jatropha curcas]
20 Hb_002631_240 0.1078857632 - - JHL17M24.3 [Jatropha curcas]

Gene co-expression network

sample Hb_001022_030 Hb_001022_030 Hb_002874_180 Hb_002874_180 Hb_001022_030--Hb_002874_180 Hb_156850_100 Hb_156850_100 Hb_001022_030--Hb_156850_100 Hb_003728_100 Hb_003728_100 Hb_001022_030--Hb_003728_100 Hb_000539_050 Hb_000539_050 Hb_001022_030--Hb_000539_050 Hb_005539_010 Hb_005539_010 Hb_001022_030--Hb_005539_010 Hb_009225_020 Hb_009225_020 Hb_001022_030--Hb_009225_020 Hb_077026_010 Hb_077026_010 Hb_002874_180--Hb_077026_010 Hb_000058_130 Hb_000058_130 Hb_002874_180--Hb_000058_130 Hb_000003_170 Hb_000003_170 Hb_002874_180--Hb_000003_170 Hb_000028_520 Hb_000028_520 Hb_002874_180--Hb_000028_520 Hb_000003_780 Hb_000003_780 Hb_002874_180--Hb_000003_780 Hb_160271_010 Hb_160271_010 Hb_156850_100--Hb_160271_010 Hb_048093_010 Hb_048093_010 Hb_156850_100--Hb_048093_010 Hb_174865_040 Hb_174865_040 Hb_156850_100--Hb_174865_040 Hb_002631_240 Hb_002631_240 Hb_156850_100--Hb_002631_240 Hb_012573_050 Hb_012573_050 Hb_156850_100--Hb_012573_050 Hb_001882_010 Hb_001882_010 Hb_156850_100--Hb_001882_010 Hb_003728_100--Hb_009225_020 Hb_000207_300 Hb_000207_300 Hb_003728_100--Hb_000207_300 Hb_000221_140 Hb_000221_140 Hb_003728_100--Hb_000221_140 Hb_003462_070 Hb_003462_070 Hb_003728_100--Hb_003462_070 Hb_005405_020 Hb_005405_020 Hb_003728_100--Hb_005405_020 Hb_002218_030 Hb_002218_030 Hb_000539_050--Hb_002218_030 Hb_093666_010 Hb_093666_010 Hb_000539_050--Hb_093666_010 Hb_000907_180 Hb_000907_180 Hb_000539_050--Hb_000907_180 Hb_000539_050--Hb_009225_020 Hb_077549_010 Hb_077549_010 Hb_000539_050--Hb_077549_010 Hb_006538_120 Hb_006538_120 Hb_005539_010--Hb_006538_120 Hb_000212_440 Hb_000212_440 Hb_005539_010--Hb_000212_440 Hb_000941_100 Hb_000941_100 Hb_005539_010--Hb_000941_100 Hb_001935_100 Hb_001935_100 Hb_005539_010--Hb_001935_100 Hb_000227_170 Hb_000227_170 Hb_005539_010--Hb_000227_170 Hb_012150_030 Hb_012150_030 Hb_005539_010--Hb_012150_030 Hb_009225_020--Hb_000207_300 Hb_009225_020--Hb_005405_020 Hb_009225_020--Hb_003462_070 Hb_001205_300 Hb_001205_300 Hb_009225_020--Hb_001205_300 Hb_009225_020--Hb_000221_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.41225 5.41841 28.4959 17.9557 9.39664 12.48
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.7601 10.8243 6.95503 7.8791 21.622

CAGE analysis