Hb_001022_070

Information

Type -
Description -
Location Contig1022: 105481-109761
Sequence    

Annotation

kegg
ID rcu:RCOM_0293270
description Beta-fructofuranosidase, insoluble isoenzyme 3 precursor, putative (EC:3.2.1.26)
nr
ID AFR69123.1
description cell wall invertase [Manihot esculenta]
swissprot
ID P26792
description Beta-fructofuranosidase, insoluble isoenzyme 1 OS=Daucus carota GN=INV1 PE=1 SV=1
trembl
ID J9UMU3
description Cell wall invertase OS=Manihot esculenta GN=CWINV2 PE=2 SV=1
Gene Ontology
ID GO:0004575
description beta- insoluble isoenzyme 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01025: 105427-106078 , PASA_asmbl_01026: 106250-106405 , PASA_asmbl_01027: 106520-109487 , PASA_asmbl_01028: 106520-109487
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001022_070 0.0 - - cell wall invertase [Manihot esculenta]
2 Hb_000000_320 0.0785170639 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
3 Hb_001953_010 0.0810868773 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
4 Hb_003427_020 0.0839792806 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
5 Hb_004474_070 0.0868681997 desease resistance Gene Name: NB-ARC Disease resistance protein RPP8, putative [Ricinus communis]
6 Hb_002303_050 0.0882263383 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor PTL-like [Populus euphratica]
7 Hb_005946_200 0.0901240428 - - hypothetical protein POPTR_0006s16210g [Populus trichocarpa]
8 Hb_004112_070 0.0924322899 - - -
9 Hb_002804_070 0.0948888678 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
10 Hb_001221_050 0.0976164875 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
11 Hb_001333_030 0.09935119 - - Abscisic acid 8'-hydroxylase 1 [Theobroma cacao]
12 Hb_009222_040 0.1066627096 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
13 Hb_006153_020 0.1147688708 - - vacuolar invertase [Manihot esculenta]
14 Hb_128216_010 0.1162117998 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
15 Hb_009070_010 0.1162561812 - - Spermidine synthase, putative [Ricinus communis]
16 Hb_021576_160 0.1168982685 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
17 Hb_005111_020 0.1180329617 - - hypothetical protein CISIN_1g0417821mg, partial [Citrus sinensis]
18 Hb_000020_210 0.1183957714 - - hypothetical protein JCGZ_17348 [Jatropha curcas]
19 Hb_051408_010 0.1219449524 - - calcineurin-like phosphoesterase [Manihot esculenta]
20 Hb_007357_010 0.1253673984 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_001022_070 Hb_001022_070 Hb_000000_320 Hb_000000_320 Hb_001022_070--Hb_000000_320 Hb_001953_010 Hb_001953_010 Hb_001022_070--Hb_001953_010 Hb_003427_020 Hb_003427_020 Hb_001022_070--Hb_003427_020 Hb_004474_070 Hb_004474_070 Hb_001022_070--Hb_004474_070 Hb_002303_050 Hb_002303_050 Hb_001022_070--Hb_002303_050 Hb_005946_200 Hb_005946_200 Hb_001022_070--Hb_005946_200 Hb_000000_320--Hb_001953_010 Hb_004112_070 Hb_004112_070 Hb_000000_320--Hb_004112_070 Hb_005111_020 Hb_005111_020 Hb_000000_320--Hb_005111_020 Hb_000000_320--Hb_003427_020 Hb_000000_320--Hb_004474_070 Hb_001953_010--Hb_004474_070 Hb_002804_070 Hb_002804_070 Hb_001953_010--Hb_002804_070 Hb_001953_010--Hb_002303_050 Hb_128216_010 Hb_128216_010 Hb_001953_010--Hb_128216_010 Hb_001221_050 Hb_001221_050 Hb_003427_020--Hb_001221_050 Hb_021576_160 Hb_021576_160 Hb_003427_020--Hb_021576_160 Hb_003427_020--Hb_002804_070 Hb_003427_020--Hb_005946_200 Hb_004474_070--Hb_002303_050 Hb_004474_070--Hb_128216_010 Hb_001675_350 Hb_001675_350 Hb_004474_070--Hb_001675_350 Hb_004474_070--Hb_002804_070 Hb_000139_390 Hb_000139_390 Hb_004474_070--Hb_000139_390 Hb_002303_050--Hb_005946_200 Hb_002303_050--Hb_001675_350 Hb_002303_050--Hb_002804_070 Hb_002303_050--Hb_128216_010 Hb_005946_200--Hb_001221_050 Hb_005946_200--Hb_002804_070 Hb_006153_020 Hb_006153_020 Hb_005946_200--Hb_006153_020 Hb_002811_320 Hb_002811_320 Hb_005946_200--Hb_002811_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.55727 3.6679 7.84689 0.0118452 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0226568 0 0.0180706 1.61615

CAGE analysis