Hb_001025_080

Information

Type -
Description -
Location Contig1025: 78353-82938
Sequence    

Annotation

kegg
ID pop:POPTR_0002s19860g
description POPTRDRAFT_755634; D111/G-patch domain-containing family protein
nr
ID KDP31055.1
description hypothetical protein JCGZ_11431 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KFL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11431 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01079: 78381-82967 , PASA_asmbl_01080: 80628-82932 , PASA_asmbl_01081: 78402-80472
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001025_080 0.0 - - hypothetical protein JCGZ_11431 [Jatropha curcas]
2 Hb_000785_040 0.0672046366 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
3 Hb_004096_100 0.0748785438 - - PREDICTED: NADPH-dependent diflavin oxidoreductase 1 [Jatropha curcas]
4 Hb_004102_140 0.0773736591 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000007_280 0.0810860409 - - hypothetical protein VITISV_000066 [Vitis vinifera]
6 Hb_001473_090 0.0853731591 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
7 Hb_003044_020 0.0856779383 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
8 Hb_000896_080 0.0858306865 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP95 isoform X1 [Vitis vinifera]
9 Hb_003966_030 0.0864810009 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]
10 Hb_002785_050 0.086641004 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
11 Hb_000116_500 0.0876043924 - - PREDICTED: trafficking protein particle complex subunit 11 [Jatropha curcas]
12 Hb_007062_020 0.0883386086 - - gcn4-complementing protein, putative [Ricinus communis]
13 Hb_012053_080 0.0884503192 - - AP-2 complex subunit alpha, putative [Ricinus communis]
14 Hb_000671_110 0.0885581053 - - hypothetical protein JCGZ_23794 [Jatropha curcas]
15 Hb_001195_320 0.0888574721 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
16 Hb_008112_030 0.0895085279 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001488_410 0.0896645956 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
18 Hb_000183_020 0.0901418625 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
19 Hb_000429_220 0.0903074604 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
20 Hb_004453_110 0.0916246853 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_001025_080 Hb_001025_080 Hb_000785_040 Hb_000785_040 Hb_001025_080--Hb_000785_040 Hb_004096_100 Hb_004096_100 Hb_001025_080--Hb_004096_100 Hb_004102_140 Hb_004102_140 Hb_001025_080--Hb_004102_140 Hb_000007_280 Hb_000007_280 Hb_001025_080--Hb_000007_280 Hb_001473_090 Hb_001473_090 Hb_001025_080--Hb_001473_090 Hb_003044_020 Hb_003044_020 Hb_001025_080--Hb_003044_020 Hb_007062_020 Hb_007062_020 Hb_000785_040--Hb_007062_020 Hb_000470_070 Hb_000470_070 Hb_000785_040--Hb_000470_070 Hb_003966_030 Hb_003966_030 Hb_000785_040--Hb_003966_030 Hb_027380_140 Hb_027380_140 Hb_000785_040--Hb_027380_140 Hb_000785_040--Hb_001473_090 Hb_004096_100--Hb_003966_030 Hb_001488_410 Hb_001488_410 Hb_004096_100--Hb_001488_410 Hb_004096_100--Hb_004102_140 Hb_010381_060 Hb_010381_060 Hb_004096_100--Hb_010381_060 Hb_003428_070 Hb_003428_070 Hb_004096_100--Hb_003428_070 Hb_174821_010 Hb_174821_010 Hb_004096_100--Hb_174821_010 Hb_004102_140--Hb_003966_030 Hb_004102_140--Hb_001488_410 Hb_001617_060 Hb_001617_060 Hb_004102_140--Hb_001617_060 Hb_003362_070 Hb_003362_070 Hb_004102_140--Hb_003362_070 Hb_000820_170 Hb_000820_170 Hb_004102_140--Hb_000820_170 Hb_000101_380 Hb_000101_380 Hb_000007_280--Hb_000101_380 Hb_003549_090 Hb_003549_090 Hb_000007_280--Hb_003549_090 Hb_000915_080 Hb_000915_080 Hb_000007_280--Hb_000915_080 Hb_001005_030 Hb_001005_030 Hb_000007_280--Hb_001005_030 Hb_011310_130 Hb_011310_130 Hb_000007_280--Hb_011310_130 Hb_010272_010 Hb_010272_010 Hb_000007_280--Hb_010272_010 Hb_000209_070 Hb_000209_070 Hb_001473_090--Hb_000209_070 Hb_002749_110 Hb_002749_110 Hb_001473_090--Hb_002749_110 Hb_001178_150 Hb_001178_150 Hb_001473_090--Hb_001178_150 Hb_000347_570 Hb_000347_570 Hb_001473_090--Hb_000347_570 Hb_009151_020 Hb_009151_020 Hb_001473_090--Hb_009151_020 Hb_000922_370 Hb_000922_370 Hb_003044_020--Hb_000922_370 Hb_000183_020 Hb_000183_020 Hb_003044_020--Hb_000183_020 Hb_006252_020 Hb_006252_020 Hb_003044_020--Hb_006252_020 Hb_003044_020--Hb_003966_030 Hb_003044_020--Hb_003362_070 Hb_002329_040 Hb_002329_040 Hb_003044_020--Hb_002329_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.94786 7.6765 6.82627 8.61244 13.977 18.0078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.16586 6.23803 6.38626 8.30018 8.09238

CAGE analysis