Hb_001025_120

Information

Type transcription factor
Description TF Family: Jumonji
Location Contig1025: 107930-113161
Sequence    

Annotation

kegg
ID rcu:RCOM_1509750
description transcription factor, putative
nr
ID XP_012080013.1
description PREDICTED: jmjC domain-containing protein 4 [Jatropha curcas]
swissprot
ID Q08BY5
description JmjC domain-containing protein 4 OS=Danio rerio GN=jmjd4 PE=2 SV=1
trembl
ID A0A067K4B1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11437 PE=4 SV=1
Gene Ontology
ID GO:0032452
description jmjc domain-containing protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01088: 109504-110433 , PASA_asmbl_01089: 112168-113003
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001025_120 0.0 transcription factor TF Family: Jumonji PREDICTED: jmjC domain-containing protein 4 [Jatropha curcas]
2 Hb_018790_020 0.0462865408 - - protein kinase, putative [Ricinus communis]
3 Hb_002716_060 0.0516376037 - - carboxylesterase np, putative [Ricinus communis]
4 Hb_000676_070 0.069163988 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
5 Hb_007894_150 0.0705988873 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
6 Hb_004807_020 0.0717248188 - - PREDICTED: transcription initiation factor TFIID subunit 14b-like [Jatropha curcas]
7 Hb_000028_520 0.0722590011 - - hypothetical protein L484_025125 [Morus notabilis]
8 Hb_010931_070 0.0727133939 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 2 isoform X1 [Jatropha curcas]
9 Hb_003861_060 0.0747457642 - - PREDICTED: treacle protein [Jatropha curcas]
10 Hb_004109_320 0.0758640179 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
11 Hb_000365_230 0.077277765 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
12 Hb_004100_050 0.0777569602 - - PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Jatropha curcas]
13 Hb_170416_010 0.0783096867 - - PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Jatropha curcas]
14 Hb_001761_120 0.0804879325 - - hypothetical protein JCGZ_22564 [Jatropha curcas]
15 Hb_001703_040 0.0814590623 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
16 Hb_089839_010 0.0821195319 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]
17 Hb_000567_070 0.0835521513 - - autophagy protein, putative [Ricinus communis]
18 Hb_004052_080 0.0835596315 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000757_030 0.0849348693 - - radical sam protein, putative [Ricinus communis]
20 Hb_000254_100 0.085649602 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]

Gene co-expression network

sample Hb_001025_120 Hb_001025_120 Hb_018790_020 Hb_018790_020 Hb_001025_120--Hb_018790_020 Hb_002716_060 Hb_002716_060 Hb_001025_120--Hb_002716_060 Hb_000676_070 Hb_000676_070 Hb_001025_120--Hb_000676_070 Hb_007894_150 Hb_007894_150 Hb_001025_120--Hb_007894_150 Hb_004807_020 Hb_004807_020 Hb_001025_120--Hb_004807_020 Hb_000028_520 Hb_000028_520 Hb_001025_120--Hb_000028_520 Hb_018790_020--Hb_007894_150 Hb_018790_020--Hb_000028_520 Hb_018790_020--Hb_002716_060 Hb_000365_230 Hb_000365_230 Hb_018790_020--Hb_000365_230 Hb_004109_320 Hb_004109_320 Hb_018790_020--Hb_004109_320 Hb_000476_060 Hb_000476_060 Hb_002716_060--Hb_000476_060 Hb_002716_060--Hb_004109_320 Hb_043792_010 Hb_043792_010 Hb_002716_060--Hb_043792_010 Hb_000282_090 Hb_000282_090 Hb_002716_060--Hb_000282_090 Hb_000676_070--Hb_000028_520 Hb_000336_210 Hb_000336_210 Hb_000676_070--Hb_000336_210 Hb_001824_080 Hb_001824_080 Hb_000676_070--Hb_001824_080 Hb_005588_080 Hb_005588_080 Hb_000676_070--Hb_005588_080 Hb_000567_070 Hb_000567_070 Hb_000676_070--Hb_000567_070 Hb_007894_150--Hb_004109_320 Hb_164390_010 Hb_164390_010 Hb_007894_150--Hb_164390_010 Hb_007894_150--Hb_000365_230 Hb_006189_020 Hb_006189_020 Hb_007894_150--Hb_006189_020 Hb_005000_170 Hb_005000_170 Hb_007894_150--Hb_005000_170 Hb_001226_150 Hb_001226_150 Hb_007894_150--Hb_001226_150 Hb_001025_090 Hb_001025_090 Hb_004807_020--Hb_001025_090 Hb_006615_050 Hb_006615_050 Hb_004807_020--Hb_006615_050 Hb_171900_090 Hb_171900_090 Hb_004807_020--Hb_171900_090 Hb_146255_020 Hb_146255_020 Hb_004807_020--Hb_146255_020 Hb_004807_020--Hb_018790_020 Hb_002157_120 Hb_002157_120 Hb_000028_520--Hb_002157_120 Hb_000061_180 Hb_000061_180 Hb_000028_520--Hb_000061_180 Hb_000058_130 Hb_000058_130 Hb_000028_520--Hb_000058_130 Hb_003119_060 Hb_003119_060 Hb_000028_520--Hb_003119_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.74952 3.53728 7.03224 3.82529 3.52852 2.26834
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.555 4.22539 3.87825 3.45239 4.36096

CAGE analysis