Hb_001025_130

Information

Type -
Description -
Location Contig1025: 114929-118009
Sequence    

Annotation

kegg
ID pop:POPTR_0015s09190g
description POPTRDRAFT_903753; hypothetical protein
nr
ID XP_012080014.1
description PREDICTED: uncharacterized protein LOC105640342 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9IEV3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s09190g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01090: 114844-118120 , PASA_asmbl_01091: 114863-118007 , PASA_asmbl_01092: 115554-115858
cDNA
(Sanger)
(ID:Location)		 038_L17.ab1: 115169-117166

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001025_130 0.0 - - PREDICTED: uncharacterized protein LOC105640342 [Jatropha curcas]
2 Hb_001709_120 0.0513808233 - - hypothetical protein RCOM_1313640 [Ricinus communis]
3 Hb_015292_020 0.0761085528 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
4 Hb_006483_070 0.0793478371 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
5 Hb_000586_110 0.0821959767 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
6 Hb_002902_060 0.0828782414 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
7 Hb_162472_010 0.0850730888 - - conserved hypothetical protein [Ricinus communis]
8 Hb_026218_010 0.0879582226 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001975_110 0.0906096392 - - -
10 Hb_050898_030 0.0926124812 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007122_020 0.0928534425 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
12 Hb_001056_040 0.0933880272 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
13 Hb_000003_370 0.0965256941 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
14 Hb_000320_010 0.098553956 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002636_120 0.1021427047 - - Protein bem46, putative [Ricinus communis]
16 Hb_002045_210 0.1024760424 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
17 Hb_001136_080 0.1027521871 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
18 Hb_174639_010 0.1038070679 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_040852_010 0.1052203975 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000333_140 0.1061028501 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]

Gene co-expression network

sample Hb_001025_130 Hb_001025_130 Hb_001709_120 Hb_001709_120 Hb_001025_130--Hb_001709_120 Hb_015292_020 Hb_015292_020 Hb_001025_130--Hb_015292_020 Hb_006483_070 Hb_006483_070 Hb_001025_130--Hb_006483_070 Hb_000586_110 Hb_000586_110 Hb_001025_130--Hb_000586_110 Hb_002902_060 Hb_002902_060 Hb_001025_130--Hb_002902_060 Hb_162472_010 Hb_162472_010 Hb_001025_130--Hb_162472_010 Hb_001709_120--Hb_015292_020 Hb_001709_120--Hb_002902_060 Hb_174639_010 Hb_174639_010 Hb_001709_120--Hb_174639_010 Hb_001056_040 Hb_001056_040 Hb_001709_120--Hb_001056_040 Hb_001709_120--Hb_006483_070 Hb_000333_140 Hb_000333_140 Hb_015292_020--Hb_000333_140 Hb_015292_020--Hb_002902_060 Hb_016911_010 Hb_016911_010 Hb_015292_020--Hb_016911_010 Hb_007122_020 Hb_007122_020 Hb_015292_020--Hb_007122_020 Hb_001136_080 Hb_001136_080 Hb_006483_070--Hb_001136_080 Hb_006483_070--Hb_162472_010 Hb_006483_070--Hb_015292_020 Hb_001975_110 Hb_001975_110 Hb_006483_070--Hb_001975_110 Hb_026218_010 Hb_026218_010 Hb_000586_110--Hb_026218_010 Hb_005731_040 Hb_005731_040 Hb_000586_110--Hb_005731_040 Hb_097292_010 Hb_097292_010 Hb_000586_110--Hb_097292_010 Hb_000861_060 Hb_000861_060 Hb_000586_110--Hb_000861_060 Hb_002636_120 Hb_002636_120 Hb_000586_110--Hb_002636_120 Hb_010962_020 Hb_010962_020 Hb_002902_060--Hb_010962_020 Hb_001047_090 Hb_001047_090 Hb_002902_060--Hb_001047_090 Hb_002902_060--Hb_007122_020 Hb_002902_060--Hb_001975_110 Hb_162472_010--Hb_001975_110 Hb_002276_080 Hb_002276_080 Hb_162472_010--Hb_002276_080 Hb_162472_010--Hb_001709_120 Hb_000005_290 Hb_000005_290 Hb_162472_010--Hb_000005_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0528233 1.22091 10.9623 19.1168 0.0494674 0.0642118
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0300749 0.0236611 0 0.283213 4.31233

CAGE analysis