Hb_001030_020

Information

Type -
Description -
Location Contig1030: 41447-54237
Sequence    

Annotation

kegg
ID rcu:RCOM_0723820
description Poly(A) polymerase alpha, putative (EC:2.7.7.19)
nr
ID XP_002524874.1
description Poly(A) polymerase alpha, putative [Ricinus communis]
swissprot
ID Q9LMT2
description Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana GN=PAPS1 PE=1 SV=1
trembl
ID B9SFV5
description Poly(A) polymerase alpha, putative OS=Ricinus communis GN=RCOM_0723820 PE=4 SV=1
Gene Ontology
ID GO:0005634
description poly polymerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01251: 41817-43610 , PASA_asmbl_01252: 45209-46226 , PASA_asmbl_01253: 48403-48598 , PASA_asmbl_01254: 53524-54087
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001030_020 0.0 - - Poly(A) polymerase alpha, putative [Ricinus communis]
2 Hb_001470_030 0.0530611044 - - PREDICTED: MORC family CW-type zinc finger protein 3 isoform X2 [Jatropha curcas]
3 Hb_010423_030 0.0674930162 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
4 Hb_027380_050 0.0694558609 - - PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Jatropha curcas]
5 Hb_001245_100 0.0718672785 transcription factor TF Family: Alfin-like ATP synthase alpha subunit mitochondrial, putative [Ricinus communis]
6 Hb_001163_050 0.0730218353 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
7 Hb_001157_040 0.0755859182 - - casein kinase, putative [Ricinus communis]
8 Hb_014109_040 0.0755976922 - - PREDICTED: probable folylpolyglutamate synthase [Jatropha curcas]
9 Hb_005116_060 0.0778774367 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
10 Hb_001766_060 0.0779767073 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000331_550 0.0786692219 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
12 Hb_001838_060 0.0786997725 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
13 Hb_003849_110 0.0819162695 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
14 Hb_001329_160 0.0822181419 - - PREDICTED: uncharacterized protein LOC105642679 isoform X1 [Jatropha curcas]
15 Hb_000152_500 0.0823049214 - - PREDICTED: probable mitochondrial intermediate peptidase, mitochondrial [Jatropha curcas]
16 Hb_002078_350 0.0823441169 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
17 Hb_000373_070 0.0824945368 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
18 Hb_001359_050 0.0830530114 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003125_120 0.0835617677 - - PREDICTED: TITAN-like protein [Jatropha curcas]
20 Hb_000684_380 0.0837899821 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]

Gene co-expression network

sample Hb_001030_020 Hb_001030_020 Hb_001470_030 Hb_001470_030 Hb_001030_020--Hb_001470_030 Hb_010423_030 Hb_010423_030 Hb_001030_020--Hb_010423_030 Hb_027380_050 Hb_027380_050 Hb_001030_020--Hb_027380_050 Hb_001245_100 Hb_001245_100 Hb_001030_020--Hb_001245_100 Hb_001163_050 Hb_001163_050 Hb_001030_020--Hb_001163_050 Hb_001157_040 Hb_001157_040 Hb_001030_020--Hb_001157_040 Hb_002078_350 Hb_002078_350 Hb_001470_030--Hb_002078_350 Hb_003938_090 Hb_003938_090 Hb_001470_030--Hb_003938_090 Hb_001470_030--Hb_010423_030 Hb_000152_500 Hb_000152_500 Hb_001470_030--Hb_000152_500 Hb_000373_070 Hb_000373_070 Hb_001470_030--Hb_000373_070 Hb_001278_100 Hb_001278_100 Hb_010423_030--Hb_001278_100 Hb_001123_060 Hb_001123_060 Hb_010423_030--Hb_001123_060 Hb_089032_030 Hb_089032_030 Hb_010423_030--Hb_089032_030 Hb_012022_040 Hb_012022_040 Hb_010423_030--Hb_012022_040 Hb_027380_050--Hb_001245_100 Hb_058999_020 Hb_058999_020 Hb_027380_050--Hb_058999_020 Hb_005779_060 Hb_005779_060 Hb_027380_050--Hb_005779_060 Hb_000684_470 Hb_000684_470 Hb_027380_050--Hb_000684_470 Hb_027380_050--Hb_000152_500 Hb_001766_060 Hb_001766_060 Hb_001245_100--Hb_001766_060 Hb_000667_070 Hb_000667_070 Hb_001245_100--Hb_000667_070 Hb_005846_040 Hb_005846_040 Hb_001245_100--Hb_005846_040 Hb_003151_040 Hb_003151_040 Hb_001245_100--Hb_003151_040 Hb_002046_180 Hb_002046_180 Hb_001245_100--Hb_002046_180 Hb_000331_550 Hb_000331_550 Hb_001163_050--Hb_000331_550 Hb_003125_120 Hb_003125_120 Hb_001163_050--Hb_003125_120 Hb_001163_050--Hb_000373_070 Hb_001142_030 Hb_001142_030 Hb_001163_050--Hb_001142_030 Hb_003001_080 Hb_003001_080 Hb_001163_050--Hb_003001_080 Hb_008453_140 Hb_008453_140 Hb_001163_050--Hb_008453_140 Hb_000866_220 Hb_000866_220 Hb_001157_040--Hb_000866_220 Hb_001838_060 Hb_001838_060 Hb_001157_040--Hb_001838_060 Hb_000563_320 Hb_000563_320 Hb_001157_040--Hb_000563_320 Hb_000016_250 Hb_000016_250 Hb_001157_040--Hb_000016_250 Hb_000331_670 Hb_000331_670 Hb_001157_040--Hb_000331_670 Hb_000538_270 Hb_000538_270 Hb_001157_040--Hb_000538_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6615 16.3759 10.8671 10.8475 10.0911 11.3422
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7439 24.3153 13.0427 12.9011 10.7745

CAGE analysis