Hb_001030_110

Information

Type -
Description -
Location Contig1030: 231233-242380
Sequence    

Annotation

kegg
ID rcu:RCOM_0723800
description oxidoreductase, putative
nr
ID XP_012075419.1
description PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 isoform X1 [Jatropha curcas]
swissprot
ID Q3ED68
description Uncharacterized PKHD-type hydroxylase At1g22950 OS=Arabidopsis thaliana GN=At1g22950 PE=2 SV=2
trembl
ID A0A067KGA5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10691 PE=4 SV=1
Gene Ontology
ID GO:0005506
description uncharacterized pkhd-type hydroxylase at1g22950-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01256: 231136-241685 , PASA_asmbl_01257: 231136-241685
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001030_110 0.0 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 isoform X1 [Jatropha curcas]
2 Hb_000291_060 0.0752076389 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
3 Hb_154114_010 0.0805904641 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
4 Hb_000617_100 0.0850909579 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
5 Hb_000789_310 0.0853545157 - - PREDICTED: E3 ubiquitin-protein ligase PRT1 [Jatropha curcas]
6 Hb_002805_190 0.0859910047 - - spliceosome associated protein, putative [Ricinus communis]
7 Hb_001143_180 0.0877494724 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
8 Hb_003097_170 0.0877650499 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like isoform X3 [Jatropha curcas]
9 Hb_007576_110 0.0891372998 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
10 Hb_183612_040 0.0896015045 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
11 Hb_001946_340 0.0905619495 - - PREDICTED: mediator of RNA polymerase II transcription subunit 17-like isoform X1 [Jatropha curcas]
12 Hb_000923_080 0.0906414799 - - PREDICTED: eukaryotic translation initiation factor 2A [Jatropha curcas]
13 Hb_003371_110 0.0910982694 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
14 Hb_000680_090 0.0914457495 - - Protein SEY1, putative [Ricinus communis]
15 Hb_006816_050 0.0915767972 - - PREDICTED: RNA polymerase II-associated protein 3 isoform X4 [Jatropha curcas]
16 Hb_001860_040 0.0916916747 - - PREDICTED: cleavage stimulation factor subunit 77 isoform X4 [Jatropha curcas]
17 Hb_008159_020 0.0917571054 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
18 Hb_007123_030 0.0922804935 - - PREDICTED: uncharacterized protein LOC105634056 isoform X3 [Jatropha curcas]
19 Hb_000648_100 0.0943966908 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
20 Hb_004935_030 0.0959415548 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]

Gene co-expression network

sample Hb_001030_110 Hb_001030_110 Hb_000291_060 Hb_000291_060 Hb_001030_110--Hb_000291_060 Hb_154114_010 Hb_154114_010 Hb_001030_110--Hb_154114_010 Hb_000617_100 Hb_000617_100 Hb_001030_110--Hb_000617_100 Hb_000789_310 Hb_000789_310 Hb_001030_110--Hb_000789_310 Hb_002805_190 Hb_002805_190 Hb_001030_110--Hb_002805_190 Hb_001143_180 Hb_001143_180 Hb_001030_110--Hb_001143_180 Hb_006816_050 Hb_006816_050 Hb_000291_060--Hb_006816_050 Hb_000291_060--Hb_001143_180 Hb_000291_060--Hb_154114_010 Hb_002078_110 Hb_002078_110 Hb_000291_060--Hb_002078_110 Hb_111198_010 Hb_111198_010 Hb_000291_060--Hb_111198_010 Hb_000594_040 Hb_000594_040 Hb_154114_010--Hb_000594_040 Hb_004128_050 Hb_004128_050 Hb_154114_010--Hb_004128_050 Hb_002876_130 Hb_002876_130 Hb_154114_010--Hb_002876_130 Hb_002835_230 Hb_002835_230 Hb_154114_010--Hb_002835_230 Hb_000289_040 Hb_000289_040 Hb_154114_010--Hb_000289_040 Hb_007576_110 Hb_007576_110 Hb_000617_100--Hb_007576_110 Hb_003549_150 Hb_003549_150 Hb_000617_100--Hb_003549_150 Hb_014361_070 Hb_014361_070 Hb_000617_100--Hb_014361_070 Hb_000683_070 Hb_000683_070 Hb_000617_100--Hb_000683_070 Hb_001195_560 Hb_001195_560 Hb_000617_100--Hb_001195_560 Hb_001051_080 Hb_001051_080 Hb_000617_100--Hb_001051_080 Hb_000789_310--Hb_007576_110 Hb_000030_190 Hb_000030_190 Hb_000789_310--Hb_000030_190 Hb_033642_030 Hb_033642_030 Hb_000789_310--Hb_033642_030 Hb_000462_060 Hb_000462_060 Hb_000789_310--Hb_000462_060 Hb_000345_380 Hb_000345_380 Hb_000789_310--Hb_000345_380 Hb_001409_020 Hb_001409_020 Hb_000789_310--Hb_001409_020 Hb_000398_080 Hb_000398_080 Hb_002805_190--Hb_000398_080 Hb_003861_050 Hb_003861_050 Hb_002805_190--Hb_003861_050 Hb_005289_040 Hb_005289_040 Hb_002805_190--Hb_005289_040 Hb_003638_090 Hb_003638_090 Hb_002805_190--Hb_003638_090 Hb_008568_020 Hb_008568_020 Hb_002805_190--Hb_008568_020 Hb_001377_310 Hb_001377_310 Hb_002805_190--Hb_001377_310 Hb_003878_110 Hb_003878_110 Hb_001143_180--Hb_003878_110 Hb_033834_030 Hb_033834_030 Hb_001143_180--Hb_033834_030 Hb_001143_180--Hb_006816_050 Hb_183612_040 Hb_183612_040 Hb_001143_180--Hb_183612_040 Hb_005337_090 Hb_005337_090 Hb_001143_180--Hb_005337_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1586 16.7793 14.1735 12.8802 16.5741 22.7016
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.564 7.3731 8.94559 12.949 7.35827

CAGE analysis