Hb_001030_120

Information

Type -
Description -
Location Contig1030: 260041-264847
Sequence    

Annotation

kegg
ID tcc:TCM_027755
description Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial
nr
ID XP_012075414.1
description PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
swissprot
ID Q5UPJ7
description Tyrosine--tRNA ligase OS=Acanthamoeba polyphaga mimivirus GN=YARS PE=1 SV=1
trembl
ID A0A067KJH4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10687 PE=4 SV=1
Gene Ontology
ID GO:0004831
description tyrosine--trna cytoplasmic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01258: 259952-264779
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001030_120 0.0 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
2 Hb_004195_160 0.0536330219 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
3 Hb_002686_270 0.0577953087 - - conserved hypothetical protein [Ricinus communis]
4 Hb_009111_050 0.058306355 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
5 Hb_000032_570 0.0599906361 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
6 Hb_005062_070 0.0607373368 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
7 Hb_028872_140 0.0618087377 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
8 Hb_001454_210 0.0620107545 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
9 Hb_133271_020 0.0622839009 - - prohibitin, putative [Ricinus communis]
10 Hb_000017_120 0.0623951005 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
11 Hb_158092_070 0.0644131459 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
12 Hb_003642_060 0.0661550726 - - hypothetical protein RCOM_1189860 [Ricinus communis]
13 Hb_000418_100 0.0670402124 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
14 Hb_000975_290 0.0677743086 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
15 Hb_028639_060 0.0678273816 - - transporter, putative [Ricinus communis]
16 Hb_007426_230 0.0696613657 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
17 Hb_006447_010 0.0712177058 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
18 Hb_001214_130 0.0717070935 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
19 Hb_015001_020 0.0728059015 - - PREDICTED: la-related protein 6B [Jatropha curcas]
20 Hb_004223_130 0.0731594626 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001030_120 Hb_001030_120 Hb_004195_160 Hb_004195_160 Hb_001030_120--Hb_004195_160 Hb_002686_270 Hb_002686_270 Hb_001030_120--Hb_002686_270 Hb_009111_050 Hb_009111_050 Hb_001030_120--Hb_009111_050 Hb_000032_570 Hb_000032_570 Hb_001030_120--Hb_000032_570 Hb_005062_070 Hb_005062_070 Hb_001030_120--Hb_005062_070 Hb_028872_140 Hb_028872_140 Hb_001030_120--Hb_028872_140 Hb_007426_230 Hb_007426_230 Hb_004195_160--Hb_007426_230 Hb_000398_180 Hb_000398_180 Hb_004195_160--Hb_000398_180 Hb_001377_290 Hb_001377_290 Hb_004195_160--Hb_001377_290 Hb_006332_020 Hb_006332_020 Hb_004195_160--Hb_006332_020 Hb_002609_110 Hb_002609_110 Hb_004195_160--Hb_002609_110 Hb_133271_020 Hb_133271_020 Hb_002686_270--Hb_133271_020 Hb_158092_070 Hb_158092_070 Hb_002686_270--Hb_158092_070 Hb_000975_290 Hb_000975_290 Hb_002686_270--Hb_000975_290 Hb_000152_140 Hb_000152_140 Hb_002686_270--Hb_000152_140 Hb_001454_140 Hb_001454_140 Hb_002686_270--Hb_001454_140 Hb_009111_050--Hb_028872_140 Hb_033642_010 Hb_033642_010 Hb_009111_050--Hb_033642_010 Hb_001454_210 Hb_001454_210 Hb_009111_050--Hb_001454_210 Hb_000190_140 Hb_000190_140 Hb_009111_050--Hb_000190_140 Hb_015306_020 Hb_015306_020 Hb_009111_050--Hb_015306_020 Hb_003392_040 Hb_003392_040 Hb_000032_570--Hb_003392_040 Hb_000032_570--Hb_028872_140 Hb_000169_010 Hb_000169_010 Hb_000032_570--Hb_000169_010 Hb_003728_020 Hb_003728_020 Hb_000032_570--Hb_003728_020 Hb_006692_030 Hb_006692_030 Hb_000032_570--Hb_006692_030 Hb_005062_070--Hb_001454_210 Hb_004046_010 Hb_004046_010 Hb_005062_070--Hb_004046_010 Hb_000030_010 Hb_000030_010 Hb_005062_070--Hb_000030_010 Hb_005062_070--Hb_000190_140 Hb_005062_070--Hb_009111_050 Hb_028872_140--Hb_001454_210 Hb_028872_140--Hb_000398_180 Hb_028872_140--Hb_033642_010 Hb_002811_360 Hb_002811_360 Hb_028872_140--Hb_002811_360 Hb_028872_140--Hb_015306_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
161.651 54.8982 30.4977 42.1565 144.012 184.412
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
141.989 132.527 143.962 61.1694 26.1428

CAGE analysis