Hb_001031_060

Information

Type -
Description -
Location Contig1031: 87408-89164
Sequence    

Annotation

kegg
ID pxb:103940329
description uncharacterized LOC103940329
nr
ID XP_009348699.1
description PREDICTED: uncharacterized protein LOC103940329 [Pyrus x bretschneideri]
swissprot
ID -
description -
trembl
ID Q2QNW5
description Retrotransposon protein, putative, unclassified, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os12g36510 PE=4 SV=1
Gene Ontology
ID GO:0003824
description ribonuclease h protein at1g65750

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001031_060 0.0 - - PREDICTED: uncharacterized protein LOC103940329 [Pyrus x bretschneideri]
2 Hb_001501_040 0.1532913268 - - PREDICTED: uncharacterized protein LOC102663792 [Glycine max]
3 Hb_000510_220 0.1574250445 - - -
4 Hb_002426_010 0.2056662724 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
5 Hb_009189_060 0.2203374859 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
6 Hb_006634_010 0.2521712284 - - -
7 Hb_007879_010 0.3002354988 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
8 Hb_040948_020 0.3057934081 - - -
9 Hb_003772_040 0.3154936062 - - -
10 Hb_001638_100 0.329309217 - - PREDICTED: probable protein S-acyltransferase 12 [Vitis vinifera]
11 Hb_008221_130 0.3345857697 - - hypothetical protein VITISV_016971 [Vitis vinifera]
12 Hb_002345_080 0.3362551234 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_004483_020 0.3424934228 - - -
14 Hb_171273_010 0.3449794687 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
15 Hb_089341_010 0.3465284826 - - Uncharacterized protein TCM_018339 [Theobroma cacao]
16 Hb_001506_030 0.3486452016 - - DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
17 Hb_004800_050 0.3491722369 - - PREDICTED: uncharacterized protein LOC105643859 [Jatropha curcas]
18 Hb_006230_040 0.3628870315 - - kinase, putative [Ricinus communis]
19 Hb_000318_240 0.3671127238 - - conserved hypothetical protein [Ricinus communis]
20 Hb_027472_130 0.3674062034 - - Cytochrome P450 [Theobroma cacao]

Gene co-expression network

sample Hb_001031_060 Hb_001031_060 Hb_001501_040 Hb_001501_040 Hb_001031_060--Hb_001501_040 Hb_000510_220 Hb_000510_220 Hb_001031_060--Hb_000510_220 Hb_002426_010 Hb_002426_010 Hb_001031_060--Hb_002426_010 Hb_009189_060 Hb_009189_060 Hb_001031_060--Hb_009189_060 Hb_006634_010 Hb_006634_010 Hb_001031_060--Hb_006634_010 Hb_007879_010 Hb_007879_010 Hb_001031_060--Hb_007879_010 Hb_001501_040--Hb_000510_220 Hb_001638_100 Hb_001638_100 Hb_001501_040--Hb_001638_100 Hb_040948_020 Hb_040948_020 Hb_001501_040--Hb_040948_020 Hb_001501_040--Hb_002426_010 Hb_004800_050 Hb_004800_050 Hb_001501_040--Hb_004800_050 Hb_000510_220--Hb_002426_010 Hb_000510_220--Hb_009189_060 Hb_004483_020 Hb_004483_020 Hb_000510_220--Hb_004483_020 Hb_000510_220--Hb_006634_010 Hb_002426_010--Hb_004483_020 Hb_002426_010--Hb_009189_060 Hb_089341_010 Hb_089341_010 Hb_002426_010--Hb_089341_010 Hb_002426_010--Hb_006634_010 Hb_009189_060--Hb_006634_010 Hb_171273_010 Hb_171273_010 Hb_009189_060--Hb_171273_010 Hb_048207_010 Hb_048207_010 Hb_009189_060--Hb_048207_010 Hb_006634_010--Hb_171273_010 Hb_006634_010--Hb_048207_010 Hb_000668_120 Hb_000668_120 Hb_007879_010--Hb_000668_120 Hb_011224_090 Hb_011224_090 Hb_007879_010--Hb_011224_090 Hb_011161_030 Hb_011161_030 Hb_007879_010--Hb_011161_030 Hb_000172_490 Hb_000172_490 Hb_007879_010--Hb_000172_490 Hb_005016_180 Hb_005016_180 Hb_007879_010--Hb_005016_180 Hb_001138_030 Hb_001138_030 Hb_007879_010--Hb_001138_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0245312 0.0581156 0 0.0489805 0.0277324
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis