Hb_001032_080

Information

Type -
Description -
Location Contig1032: 109648-111569
Sequence    

Annotation

kegg
ID mtr:MTR_8g073260
description Ankyrin repeat protein
nr
ID XP_003629109.1
description Ankyrin repeat protein [Medicago truncatula]
swissprot
ID Q02989
description Alpha-latroinsectotoxin-Lt1a (Fragment) OS=Latrodectus tredecimguttatus PE=1 SV=1
trembl
ID G7L8Q1
description Ankyrin repeat protein OS=Medicago truncatula GN=MTR_8g073260 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001032_080 0.0 - - Ankyrin repeat protein [Medicago truncatula]
2 Hb_000170_260 0.0734413817 - - amino acid transporter, putative [Ricinus communis]
3 Hb_051408_010 0.0932319018 - - calcineurin-like phosphoesterase [Manihot esculenta]
4 Hb_004314_020 0.0983910301 - - Auxin-responsive GH3 family protein [Theobroma cacao]
5 Hb_000227_300 0.1149585051 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007426_190 0.1234229708 - - PREDICTED: uncharacterized protein LOC103325200 [Prunus mume]
7 Hb_005694_170 0.129594078 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
8 Hb_002163_070 0.1327617982 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
9 Hb_011028_040 0.1335128444 - - receptor serine/threonine kinase, putative [Ricinus communis]
10 Hb_137862_020 0.1352182169 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
11 Hb_010252_010 0.1354199759 - - -
12 Hb_003489_010 0.1355165877 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
13 Hb_002626_060 0.136061081 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
14 Hb_002849_010 0.1364813728 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
15 Hb_119583_030 0.1385486535 - - unnamed protein product [Vitis vinifera]
16 Hb_057721_010 0.1392389958 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
17 Hb_009083_020 0.1394431156 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
18 Hb_001333_030 0.1429245964 - - Abscisic acid 8'-hydroxylase 1 [Theobroma cacao]
19 Hb_160950_010 0.145408915 - - PREDICTED: uncharacterized protein LOC105761043 [Gossypium raimondii]
20 Hb_000248_080 0.1459596186 - - hypothetical protein JCGZ_26658 [Jatropha curcas]

Gene co-expression network

sample Hb_001032_080 Hb_001032_080 Hb_000170_260 Hb_000170_260 Hb_001032_080--Hb_000170_260 Hb_051408_010 Hb_051408_010 Hb_001032_080--Hb_051408_010 Hb_004314_020 Hb_004314_020 Hb_001032_080--Hb_004314_020 Hb_000227_300 Hb_000227_300 Hb_001032_080--Hb_000227_300 Hb_007426_190 Hb_007426_190 Hb_001032_080--Hb_007426_190 Hb_005694_170 Hb_005694_170 Hb_001032_080--Hb_005694_170 Hb_137862_020 Hb_137862_020 Hb_000170_260--Hb_137862_020 Hb_000170_260--Hb_004314_020 Hb_023712_020 Hb_023712_020 Hb_000170_260--Hb_023712_020 Hb_057721_010 Hb_057721_010 Hb_000170_260--Hb_057721_010 Hb_002163_070 Hb_002163_070 Hb_000170_260--Hb_002163_070 Hb_051408_010--Hb_000227_300 Hb_009070_010 Hb_009070_010 Hb_051408_010--Hb_009070_010 Hb_001333_030 Hb_001333_030 Hb_051408_010--Hb_001333_030 Hb_051408_010--Hb_007426_190 Hb_002626_060 Hb_002626_060 Hb_051408_010--Hb_002626_060 Hb_011028_040 Hb_011028_040 Hb_004314_020--Hb_011028_040 Hb_002849_010 Hb_002849_010 Hb_004314_020--Hb_002849_010 Hb_006873_010 Hb_006873_010 Hb_004314_020--Hb_006873_010 Hb_136973_020 Hb_136973_020 Hb_004314_020--Hb_136973_020 Hb_000227_300--Hb_007426_190 Hb_000861_060 Hb_000861_060 Hb_000227_300--Hb_000861_060 Hb_000227_300--Hb_009070_010 Hb_004531_130 Hb_004531_130 Hb_000227_300--Hb_004531_130 Hb_097292_010 Hb_097292_010 Hb_000227_300--Hb_097292_010 Hb_007846_030 Hb_007846_030 Hb_007426_190--Hb_007846_030 Hb_007426_190--Hb_000861_060 Hb_007426_190--Hb_097292_010 Hb_005731_040 Hb_005731_040 Hb_007426_190--Hb_005731_040 Hb_003376_110 Hb_003376_110 Hb_005694_170--Hb_003376_110 Hb_164337_010 Hb_164337_010 Hb_005694_170--Hb_164337_010 Hb_005694_170--Hb_007846_030 Hb_003207_210 Hb_003207_210 Hb_005694_170--Hb_003207_210 Hb_000933_040 Hb_000933_040 Hb_005694_170--Hb_000933_040 Hb_003248_030 Hb_003248_030 Hb_005694_170--Hb_003248_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.573331 1.38189 1.60569 0.0124792 0.0109163
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00889533 0.0936589

CAGE analysis