Hb_001035_030

Information

Type -
Description -
Location Contig1035: 41019-47026
Sequence    

Annotation

kegg
ID pop:POPTR_0006s23510g
description POPTRDRAFT_1122718; hypothetical protein
nr
ID XP_012081708.1
description PREDICTED: probable rhamnogalacturonate lyase B isoform X1 [Jatropha curcas]
swissprot
ID Q8RJP2
description Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) GN=rhiE PE=1 SV=1
trembl
ID A0A067K103
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18737 PE=4 SV=1
Gene Ontology
ID GO:0016829
description probable rhamnogalacturonate lyase b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01363: 45796-46151
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001035_030 0.0 - - PREDICTED: probable rhamnogalacturonate lyase B isoform X1 [Jatropha curcas]
2 Hb_054301_010 0.0790914451 - - hypothetical protein EUTSA_v10006737mg [Eutrema salsugineum]
3 Hb_001804_040 0.1012605783 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001104_120 0.107354118 - - -
5 Hb_001454_330 0.1081477311 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
6 Hb_004204_030 0.1094707734 - - unknown [Populus trichocarpa]
7 Hb_001951_110 0.1105318571 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
8 Hb_000563_590 0.1112388259 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
9 Hb_000866_300 0.1172900336 - - hypothetical protein CICLE_v10023145mg [Citrus clementina]
10 Hb_007441_180 0.1188866935 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007451_030 0.1249778031 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
12 Hb_003001_060 0.1325096046 - - wound-responsive family protein [Populus trichocarpa]
13 Hb_000163_200 0.1335049421 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
14 Hb_000190_060 0.1354614045 - - PREDICTED: uncharacterized protein LOC105644688 isoform X1 [Jatropha curcas]
15 Hb_000061_160 0.1358374255 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
16 Hb_000417_110 0.1364661156 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
17 Hb_000260_050 0.1377562193 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
18 Hb_000025_290 0.1382675116 - - Uncharacterized protein TCM_031320 [Theobroma cacao]
19 Hb_000318_380 0.1384279008 - - PREDICTED: diphthamide biosynthesis protein 3-like [Jatropha curcas]
20 Hb_000025_530 0.1393377989 - - PREDICTED: reactive oxygen species modulator 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001035_030 Hb_001035_030 Hb_054301_010 Hb_054301_010 Hb_001035_030--Hb_054301_010 Hb_001804_040 Hb_001804_040 Hb_001035_030--Hb_001804_040 Hb_001104_120 Hb_001104_120 Hb_001035_030--Hb_001104_120 Hb_001454_330 Hb_001454_330 Hb_001035_030--Hb_001454_330 Hb_004204_030 Hb_004204_030 Hb_001035_030--Hb_004204_030 Hb_001951_110 Hb_001951_110 Hb_001035_030--Hb_001951_110 Hb_054301_010--Hb_004204_030 Hb_000866_300 Hb_000866_300 Hb_054301_010--Hb_000866_300 Hb_054301_010--Hb_001804_040 Hb_054301_010--Hb_001951_110 Hb_003001_060 Hb_003001_060 Hb_054301_010--Hb_003001_060 Hb_001804_040--Hb_001951_110 Hb_001804_040--Hb_004204_030 Hb_001804_040--Hb_000866_300 Hb_001754_150 Hb_001754_150 Hb_001804_040--Hb_001754_150 Hb_001019_090 Hb_001019_090 Hb_001804_040--Hb_001019_090 Hb_001366_230 Hb_001366_230 Hb_001804_040--Hb_001366_230 Hb_000563_590 Hb_000563_590 Hb_001104_120--Hb_000563_590 Hb_000061_160 Hb_000061_160 Hb_001104_120--Hb_000061_160 Hb_007441_180 Hb_007441_180 Hb_001104_120--Hb_007441_180 Hb_001104_120--Hb_001804_040 Hb_001621_180 Hb_001621_180 Hb_001104_120--Hb_001621_180 Hb_001104_120--Hb_001454_330 Hb_001454_330--Hb_000563_590 Hb_000089_130 Hb_000089_130 Hb_001454_330--Hb_000089_130 Hb_000417_110 Hb_000417_110 Hb_001454_330--Hb_000417_110 Hb_011139_020 Hb_011139_020 Hb_001454_330--Hb_011139_020 Hb_001454_330--Hb_001951_110 Hb_001454_330--Hb_001804_040 Hb_004204_030--Hb_001951_110 Hb_004204_030--Hb_000866_300 Hb_006569_020 Hb_006569_020 Hb_004204_030--Hb_006569_020 Hb_000392_270 Hb_000392_270 Hb_004204_030--Hb_000392_270 Hb_001514_020 Hb_001514_020 Hb_004204_030--Hb_001514_020 Hb_001951_110--Hb_000866_300 Hb_001951_110--Hb_000417_110 Hb_001951_110--Hb_000392_270 Hb_002529_100 Hb_002529_100 Hb_001951_110--Hb_002529_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.9239 0.99841 0.981815 1.62728 13.1345 10.859
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.563 23.8741 7.02148 5.93556 0.96966

CAGE analysis