Hb_001035_070

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig1035: 90565-91587
Sequence    

Annotation

kegg
ID rcu:RCOM_0409800
description zinc finger protein, putative
nr
ID XP_012081705.1
description PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
swissprot
ID Q9LSL6
description Dof zinc finger protein DOF5.7 OS=Arabidopsis thaliana GN=DOF5.7 PE=2 SV=1
trembl
ID A0A067KD94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18734 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dof zinc finger protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001035_070 0.0 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
2 Hb_001053_150 0.1464828206 - - -
3 Hb_004429_070 0.1498117174 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
4 Hb_000141_030 0.1692614674 - - PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
5 Hb_001277_090 0.1730392923 - - PREDICTED: uncharacterized protein LOC105632061 [Jatropha curcas]
6 Hb_002078_480 0.1863624577 - - hypothetical protein CICLE_v10033318mg [Citrus clementina]
7 Hb_029510_040 0.1872287674 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera]
8 Hb_004225_150 0.1875022958 transcription factor TF Family: C3H PREDICTED: zinc finger protein 36, C3H1 type-like 3 [Jatropha curcas]
9 Hb_004871_050 0.1883274265 - - hypothetical protein F383_22684 [Gossypium arboreum]
10 Hb_002756_020 0.1908669033 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
11 Hb_011360_080 0.1924697834 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
12 Hb_002290_040 0.1957137398 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001780_120 0.197021281 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
14 Hb_005060_020 0.1997293271 - - PREDICTED: metal tolerance protein 10-like isoform X1 [Populus euphratica]
15 Hb_004324_050 0.2023043306 - - PREDICTED: spermine synthase [Jatropha curcas]
16 Hb_012799_100 0.2064962126 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
17 Hb_003599_070 0.2074860062 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_001159_080 0.208151178 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
19 Hb_004553_020 0.2091244725 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
20 Hb_000327_220 0.2093951496 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]

Gene co-expression network

sample Hb_001035_070 Hb_001035_070 Hb_001053_150 Hb_001053_150 Hb_001035_070--Hb_001053_150 Hb_004429_070 Hb_004429_070 Hb_001035_070--Hb_004429_070 Hb_000141_030 Hb_000141_030 Hb_001035_070--Hb_000141_030 Hb_001277_090 Hb_001277_090 Hb_001035_070--Hb_001277_090 Hb_002078_480 Hb_002078_480 Hb_001035_070--Hb_002078_480 Hb_029510_040 Hb_029510_040 Hb_001035_070--Hb_029510_040 Hb_001053_150--Hb_002078_480 Hb_001053_150--Hb_004429_070 Hb_000010_410 Hb_000010_410 Hb_001053_150--Hb_000010_410 Hb_000963_140 Hb_000963_140 Hb_001053_150--Hb_000963_140 Hb_006472_050 Hb_006472_050 Hb_001053_150--Hb_006472_050 Hb_002756_020 Hb_002756_020 Hb_004429_070--Hb_002756_020 Hb_002290_040 Hb_002290_040 Hb_004429_070--Hb_002290_040 Hb_011360_080 Hb_011360_080 Hb_004429_070--Hb_011360_080 Hb_004324_050 Hb_004324_050 Hb_004429_070--Hb_004324_050 Hb_000327_220 Hb_000327_220 Hb_004429_070--Hb_000327_220 Hb_004429_070--Hb_000141_030 Hb_000141_030--Hb_000963_140 Hb_010931_050 Hb_010931_050 Hb_000141_030--Hb_010931_050 Hb_000141_030--Hb_011360_080 Hb_000141_030--Hb_004324_050 Hb_000368_060 Hb_000368_060 Hb_000141_030--Hb_000368_060 Hb_000094_130 Hb_000094_130 Hb_001277_090--Hb_000094_130 Hb_001277_090--Hb_000327_220 Hb_001277_090--Hb_000141_030 Hb_006153_080 Hb_006153_080 Hb_001277_090--Hb_006153_080 Hb_001277_090--Hb_011360_080 Hb_004785_140 Hb_004785_140 Hb_001277_090--Hb_004785_140 Hb_002078_480--Hb_004429_070 Hb_002078_480--Hb_004324_050 Hb_003117_010 Hb_003117_010 Hb_002078_480--Hb_003117_010 Hb_002078_480--Hb_000963_140 Hb_012423_050 Hb_012423_050 Hb_002078_480--Hb_012423_050 Hb_000432_050 Hb_000432_050 Hb_029510_040--Hb_000432_050 Hb_029510_040--Hb_002756_020 Hb_001357_010 Hb_001357_010 Hb_029510_040--Hb_001357_010 Hb_001189_050 Hb_001189_050 Hb_029510_040--Hb_001189_050 Hb_012799_100 Hb_012799_100 Hb_029510_040--Hb_012799_100 Hb_000723_190 Hb_000723_190 Hb_029510_040--Hb_000723_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.87195 0.143717 0.397663 0.854012 0.370112 1.9837
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.26619 2.90606 13.2137 1.66639 1.19093

CAGE analysis