Hb_001038_040

Information

Type -
Description -
Location Contig1038: 91754-92038
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01412: 91516-92096
cDNA
(Sanger)
(ID:Location)		 011_L16.ab1: 91649-92096 , 018_B10.ab1: 91715-92092 , 047_I10.ab1: 91516-92096

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001038_040 0.0 - - -
2 Hb_011628_050 0.0421422162 - - PREDICTED: monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_000692_200 0.0438257586 - - PREDICTED: thioredoxin-like protein CDSP32, chloroplastic [Jatropha curcas]
4 Hb_003436_040 0.0522851519 - - monovalent cation:proton antiporter, putative [Ricinus communis]
5 Hb_005656_220 0.0581311454 - - PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]
6 Hb_004611_010 0.0625745093 - - Blue copper protein precursor, putative [Ricinus communis]
7 Hb_002161_010 0.0638310676 - - PREDICTED: 3,9-dihydroxypterocarpan 6A-monooxygenase-like [Jatropha curcas]
8 Hb_027751_070 0.0663541444 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
9 Hb_000326_110 0.0687335361 - - PREDICTED: uncharacterized protein LOC105632350 [Jatropha curcas]
10 Hb_002040_070 0.0698681788 - - -
11 Hb_008725_280 0.07238951 transcription factor TF Family: MYB hypothetical protein POPTR_0002s19920g [Populus trichocarpa]
12 Hb_000083_010 0.0733908918 - - -
13 Hb_001210_110 0.0751570032 - - PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]
14 Hb_000245_090 0.075376221 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
15 Hb_009663_030 0.0760636939 - - Blue copper protein precursor, putative [Ricinus communis]
16 Hb_000003_530 0.078324907 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
17 Hb_019064_010 0.0788107151 - - -
18 Hb_001038_020 0.0797438458 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
19 Hb_000134_240 0.0798849401 - - cytochrome P450, putative [Ricinus communis]
20 Hb_147503_020 0.0901622307 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]

Gene co-expression network

sample Hb_001038_040 Hb_001038_040 Hb_011628_050 Hb_011628_050 Hb_001038_040--Hb_011628_050 Hb_000692_200 Hb_000692_200 Hb_001038_040--Hb_000692_200 Hb_003436_040 Hb_003436_040 Hb_001038_040--Hb_003436_040 Hb_005656_220 Hb_005656_220 Hb_001038_040--Hb_005656_220 Hb_004611_010 Hb_004611_010 Hb_001038_040--Hb_004611_010 Hb_002161_010 Hb_002161_010 Hb_001038_040--Hb_002161_010 Hb_000326_110 Hb_000326_110 Hb_011628_050--Hb_000326_110 Hb_011628_050--Hb_000692_200 Hb_011628_050--Hb_003436_040 Hb_000134_240 Hb_000134_240 Hb_011628_050--Hb_000134_240 Hb_011628_050--Hb_005656_220 Hb_000692_200--Hb_003436_040 Hb_009663_030 Hb_009663_030 Hb_000692_200--Hb_009663_030 Hb_000692_200--Hb_004611_010 Hb_019064_010 Hb_019064_010 Hb_000692_200--Hb_019064_010 Hb_003436_040--Hb_004611_010 Hb_003436_040--Hb_009663_030 Hb_027403_010 Hb_027403_010 Hb_003436_040--Hb_027403_010 Hb_002040_070 Hb_002040_070 Hb_005656_220--Hb_002040_070 Hb_001210_110 Hb_001210_110 Hb_005656_220--Hb_001210_110 Hb_027751_070 Hb_027751_070 Hb_005656_220--Hb_027751_070 Hb_000083_010 Hb_000083_010 Hb_005656_220--Hb_000083_010 Hb_008725_280 Hb_008725_280 Hb_004611_010--Hb_008725_280 Hb_004611_010--Hb_027403_010 Hb_000245_090 Hb_000245_090 Hb_004611_010--Hb_000245_090 Hb_004611_010--Hb_002161_010 Hb_001038_020 Hb_001038_020 Hb_004611_010--Hb_001038_020 Hb_002161_010--Hb_008725_280 Hb_000003_530 Hb_000003_530 Hb_002161_010--Hb_000003_530 Hb_002161_010--Hb_000245_090 Hb_000762_050 Hb_000762_050 Hb_002161_010--Hb_000762_050 Hb_002161_010--Hb_001038_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 16.744 1.47697 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 73.1974

CAGE analysis