Hb_001040_040

Information

Type -
Description -
Location Contig1040: 115300-124676
Sequence    

Annotation

kegg
ID tcc:TCM_029905
description hypothetical protein
nr
ID XP_007025671.1
description Uncharacterized protein TCM_029905 [Theobroma cacao]
swissprot
ID Q5RCG0
description Trafficking protein particle complex subunit 13 OS=Pongo abelii GN=TRAPPC13 PE=2 SV=1
trembl
ID A0A061GFV4
description Uncharacterized protein OS=Theobroma cacao GN=TCM_029905 PE=4 SV=1
Gene Ontology
ID GO:0009507
description trafficking protein particle complex subunit 13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01455: 115368-125048 , PASA_asmbl_01456: 115368-125048 , PASA_asmbl_01458: 122712-122991
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001040_040 0.0 - - Uncharacterized protein TCM_029905 [Theobroma cacao]
2 Hb_000395_020 0.0702845545 - - PREDICTED: ankyrin repeat and KH domain-containing protein R11A8.7 [Jatropha curcas]
3 Hb_011915_010 0.072354767 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
4 Hb_000868_060 0.0733270905 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
5 Hb_000923_040 0.073825853 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
6 Hb_009252_100 0.0768394409 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
7 Hb_030827_030 0.0779431419 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
8 Hb_000345_530 0.0780201445 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
9 Hb_001050_010 0.0803791007 - - Advillin [Gossypium arboreum]
10 Hb_000104_080 0.0828392526 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
11 Hb_000002_490 0.0881623038 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
12 Hb_003126_100 0.089749431 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
13 Hb_002888_070 0.0903674109 - - PREDICTED: tubulin-folding cofactor E isoform X1 [Pyrus x bretschneideri]
14 Hb_011609_170 0.091244857 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
15 Hb_000640_220 0.0916389488 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
16 Hb_007044_040 0.0924039827 - - PREDICTED: uncharacterized protein LOC105646814 [Jatropha curcas]
17 Hb_003813_040 0.0926358613 - - PREDICTED: elongator complex protein 5 [Jatropha curcas]
18 Hb_000480_010 0.0926854932 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001160_120 0.0938584612 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000189_330 0.0944329149 - - PREDICTED: ER membrane protein complex subunit 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001040_040 Hb_001040_040 Hb_000395_020 Hb_000395_020 Hb_001040_040--Hb_000395_020 Hb_011915_010 Hb_011915_010 Hb_001040_040--Hb_011915_010 Hb_000868_060 Hb_000868_060 Hb_001040_040--Hb_000868_060 Hb_000923_040 Hb_000923_040 Hb_001040_040--Hb_000923_040 Hb_009252_100 Hb_009252_100 Hb_001040_040--Hb_009252_100 Hb_030827_030 Hb_030827_030 Hb_001040_040--Hb_030827_030 Hb_000395_020--Hb_000868_060 Hb_000523_050 Hb_000523_050 Hb_000395_020--Hb_000523_050 Hb_003813_040 Hb_003813_040 Hb_000395_020--Hb_003813_040 Hb_001050_010 Hb_001050_010 Hb_000395_020--Hb_001050_010 Hb_002078_020 Hb_002078_020 Hb_000395_020--Hb_002078_020 Hb_011915_010--Hb_001050_010 Hb_002249_160 Hb_002249_160 Hb_011915_010--Hb_002249_160 Hb_011609_170 Hb_011609_170 Hb_011915_010--Hb_011609_170 Hb_007044_040 Hb_007044_040 Hb_011915_010--Hb_007044_040 Hb_001198_150 Hb_001198_150 Hb_011915_010--Hb_001198_150 Hb_002888_070 Hb_002888_070 Hb_000868_060--Hb_002888_070 Hb_000868_060--Hb_001050_010 Hb_001102_080 Hb_001102_080 Hb_000868_060--Hb_001102_080 Hb_001085_320 Hb_001085_320 Hb_000868_060--Hb_001085_320 Hb_000104_080 Hb_000104_080 Hb_000923_040--Hb_000104_080 Hb_008887_050 Hb_008887_050 Hb_000923_040--Hb_008887_050 Hb_000345_530 Hb_000345_530 Hb_000923_040--Hb_000345_530 Hb_001584_290 Hb_001584_290 Hb_000923_040--Hb_001584_290 Hb_023001_020 Hb_023001_020 Hb_000923_040--Hb_023001_020 Hb_001083_050 Hb_001083_050 Hb_009252_100--Hb_001083_050 Hb_106552_050 Hb_106552_050 Hb_009252_100--Hb_106552_050 Hb_000477_030 Hb_000477_030 Hb_009252_100--Hb_000477_030 Hb_002326_020 Hb_002326_020 Hb_009252_100--Hb_002326_020 Hb_001357_380 Hb_001357_380 Hb_009252_100--Hb_001357_380 Hb_003126_100 Hb_003126_100 Hb_030827_030--Hb_003126_100 Hb_030827_030--Hb_000923_040 Hb_030827_030--Hb_000345_530 Hb_030827_030--Hb_000104_080 Hb_002587_020 Hb_002587_020 Hb_030827_030--Hb_002587_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.8211 19.6303 33.0111 15.9859 53.1844 36.404
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.842 12.24 16.9985 14.4099 10.0783

CAGE analysis