Hb_001040_080

Information

Type -
Description -
Location Contig1040: 156499-159035
Sequence    

Annotation

kegg
ID rcu:RCOM_0935980
description sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative
nr
ID XP_002519043.1
description sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
swissprot
ID Q6H5U3
description Sphingolipid delta(4)-desaturase DES1-like OS=Oryza sativa subsp. japonica GN=Os02g0639600 PE=2 SV=1
trembl
ID B9RZ74
description Sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative OS=Ricinus communis GN=RCOM_0935980 PE=4 SV=1
Gene Ontology
ID GO:0016021
description sphingolipid delta -desaturase des1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01466: 156533-159132
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001040_080 0.0 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
2 Hb_003687_040 0.1025122301 - - PREDICTED: uncharacterized protein LOC105632153 [Jatropha curcas]
3 Hb_000834_220 0.1066389105 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
4 Hb_001019_160 0.111203208 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000061_310 0.1154183836 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
6 Hb_005730_110 0.1163937253 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
7 Hb_000316_060 0.1172527638 - - hypothetical protein CISIN_1g017081mg [Citrus sinensis]
8 Hb_001104_150 0.1212557529 - - PREDICTED: protein ROS1 [Jatropha curcas]
9 Hb_001054_040 0.1238420288 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
10 Hb_000731_280 0.1264116098 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
11 Hb_022092_110 0.1265362184 - - PREDICTED: probable protein phosphatase 2C 52 [Jatropha curcas]
12 Hb_005144_060 0.1266382822 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
13 Hb_001188_050 0.1298296687 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004218_200 0.1299366842 - - Ran GTPase binding protein, putative [Ricinus communis]
15 Hb_003029_120 0.1321876417 - - PREDICTED: uncharacterized protein LOC105642638 [Jatropha curcas]
16 Hb_003606_050 0.132950883 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]
17 Hb_012404_020 0.1330899027 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000230_360 0.1343127209 - - PREDICTED: BI1-like protein [Jatropha curcas]
19 Hb_001946_200 0.1357353973 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
20 Hb_004592_010 0.1361775016 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b-like [Jatropha curcas]

Gene co-expression network

sample Hb_001040_080 Hb_001040_080 Hb_003687_040 Hb_003687_040 Hb_001040_080--Hb_003687_040 Hb_000834_220 Hb_000834_220 Hb_001040_080--Hb_000834_220 Hb_001019_160 Hb_001019_160 Hb_001040_080--Hb_001019_160 Hb_000061_310 Hb_000061_310 Hb_001040_080--Hb_000061_310 Hb_005730_110 Hb_005730_110 Hb_001040_080--Hb_005730_110 Hb_000316_060 Hb_000316_060 Hb_001040_080--Hb_000316_060 Hb_003687_040--Hb_000061_310 Hb_003687_040--Hb_001019_160 Hb_031385_010 Hb_031385_010 Hb_003687_040--Hb_031385_010 Hb_000230_360 Hb_000230_360 Hb_003687_040--Hb_000230_360 Hb_002463_050 Hb_002463_050 Hb_003687_040--Hb_002463_050 Hb_001440_010 Hb_001440_010 Hb_000834_220--Hb_001440_010 Hb_005144_060 Hb_005144_060 Hb_000834_220--Hb_005144_060 Hb_002918_120 Hb_002918_120 Hb_000834_220--Hb_002918_120 Hb_003656_090 Hb_003656_090 Hb_000834_220--Hb_003656_090 Hb_001936_180 Hb_001936_180 Hb_000834_220--Hb_001936_180 Hb_001597_030 Hb_001597_030 Hb_000834_220--Hb_001597_030 Hb_001019_160--Hb_000834_220 Hb_001019_160--Hb_000230_360 Hb_001019_160--Hb_031385_010 Hb_001019_160--Hb_001440_010 Hb_001019_160--Hb_000061_310 Hb_000061_310--Hb_000230_360 Hb_000061_310--Hb_031385_010 Hb_001048_100 Hb_001048_100 Hb_000061_310--Hb_001048_100 Hb_002301_370 Hb_002301_370 Hb_000061_310--Hb_002301_370 Hb_000627_040 Hb_000627_040 Hb_005730_110--Hb_000627_040 Hb_026240_020 Hb_026240_020 Hb_005730_110--Hb_026240_020 Hb_012404_020 Hb_012404_020 Hb_005730_110--Hb_012404_020 Hb_000418_170 Hb_000418_170 Hb_005730_110--Hb_000418_170 Hb_022092_110 Hb_022092_110 Hb_005730_110--Hb_022092_110 Hb_004592_010 Hb_004592_010 Hb_005730_110--Hb_004592_010 Hb_000996_040 Hb_000996_040 Hb_000316_060--Hb_000996_040 Hb_000316_060--Hb_003687_040 Hb_007590_110 Hb_007590_110 Hb_000316_060--Hb_007590_110 Hb_000316_060--Hb_001019_160 Hb_002897_010 Hb_002897_010 Hb_000316_060--Hb_002897_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.28629 7.54893 30.154 25.9047 1.94213 0.540919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.231863 0.0303988 0.169995 9.26018 11.4754

CAGE analysis