Hb_001040_100

Information

Type -
Description -
Location Contig1040: 163301-168999
Sequence    

Annotation

kegg
ID vvi:100852649
description general transcription factor IIH subunit 4
nr
ID XP_012091582.1
description PREDICTED: general transcription factor IIH subunit 4 [Jatropha curcas]
swissprot
ID P60027
description General transcription factor IIH subunit 4 OS=Pan troglodytes GN=GTF2H4 PE=3 SV=1
trembl
ID A0A067JB09
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21423 PE=4 SV=1
Gene Ontology
ID GO:0000439
description general transcription factor iih subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01468: 163353-168774 , PASA_asmbl_01469: 166351-166571
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001040_100 0.0 - - PREDICTED: general transcription factor IIH subunit 4 [Jatropha curcas]
2 Hb_000035_470 0.0563886434 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
3 Hb_003159_140 0.0582221099 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004020_040 0.061158738 - - PREDICTED: GTP-binding protein At3g49725, chloroplastic [Jatropha curcas]
5 Hb_004319_080 0.0672119698 - - PREDICTED: GPI ethanolamine phosphate transferase 1 [Jatropha curcas]
6 Hb_003438_050 0.0703045436 - - PREDICTED: rab3 GTPase-activating protein catalytic subunit isoform X2 [Jatropha curcas]
7 Hb_002681_090 0.0712472718 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
8 Hb_002073_190 0.0724608329 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
9 Hb_168978_030 0.0760799685 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 8 [Jatropha curcas]
10 Hb_063716_100 0.077525877 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
11 Hb_000603_030 0.077538732 - - Ribonuclease III, putative [Ricinus communis]
12 Hb_002205_210 0.0782101846 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 isoform X2 [Jatropha curcas]
13 Hb_028960_020 0.0799955684 - - PREDICTED: uncharacterized protein LOC105646163 isoform X1 [Jatropha curcas]
14 Hb_000035_110 0.0809862759 - - PREDICTED: transcription initiation factor TFIID subunit 5 [Jatropha curcas]
15 Hb_000134_270 0.0810990139 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
16 Hb_000227_220 0.0813516516 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
17 Hb_000640_170 0.0815055309 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
18 Hb_000302_310 0.081528564 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
19 Hb_000331_110 0.0815893166 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
20 Hb_000329_800 0.0821005725 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001040_100 Hb_001040_100 Hb_000035_470 Hb_000035_470 Hb_001040_100--Hb_000035_470 Hb_003159_140 Hb_003159_140 Hb_001040_100--Hb_003159_140 Hb_004020_040 Hb_004020_040 Hb_001040_100--Hb_004020_040 Hb_004319_080 Hb_004319_080 Hb_001040_100--Hb_004319_080 Hb_003438_050 Hb_003438_050 Hb_001040_100--Hb_003438_050 Hb_002681_090 Hb_002681_090 Hb_001040_100--Hb_002681_090 Hb_000035_470--Hb_004319_080 Hb_015807_050 Hb_015807_050 Hb_000035_470--Hb_015807_050 Hb_001021_150 Hb_001021_150 Hb_000035_470--Hb_001021_150 Hb_168978_030 Hb_168978_030 Hb_000035_470--Hb_168978_030 Hb_002073_190 Hb_002073_190 Hb_000035_470--Hb_002073_190 Hb_000976_140 Hb_000976_140 Hb_000035_470--Hb_000976_140 Hb_000329_800 Hb_000329_800 Hb_003159_140--Hb_000329_800 Hb_005542_130 Hb_005542_130 Hb_003159_140--Hb_005542_130 Hb_002889_010 Hb_002889_010 Hb_003159_140--Hb_002889_010 Hb_001153_210 Hb_001153_210 Hb_003159_140--Hb_001153_210 Hb_003159_140--Hb_000035_470 Hb_021374_010 Hb_021374_010 Hb_004020_040--Hb_021374_010 Hb_000035_110 Hb_000035_110 Hb_004020_040--Hb_000035_110 Hb_000227_220 Hb_000227_220 Hb_004020_040--Hb_000227_220 Hb_001377_310 Hb_001377_310 Hb_004020_040--Hb_001377_310 Hb_001922_150 Hb_001922_150 Hb_004020_040--Hb_001922_150 Hb_004319_080--Hb_000329_800 Hb_001301_150 Hb_001301_150 Hb_004319_080--Hb_001301_150 Hb_003883_060 Hb_003883_060 Hb_004319_080--Hb_003883_060 Hb_000640_170 Hb_000640_170 Hb_004319_080--Hb_000640_170 Hb_003025_110 Hb_003025_110 Hb_003438_050--Hb_003025_110 Hb_000638_120 Hb_000638_120 Hb_003438_050--Hb_000638_120 Hb_007632_240 Hb_007632_240 Hb_003438_050--Hb_007632_240 Hb_023480_010 Hb_023480_010 Hb_003438_050--Hb_023480_010 Hb_003010_020 Hb_003010_020 Hb_003438_050--Hb_003010_020 Hb_007657_020 Hb_007657_020 Hb_002681_090--Hb_007657_020 Hb_002311_290 Hb_002311_290 Hb_002681_090--Hb_002311_290 Hb_000603_030 Hb_000603_030 Hb_002681_090--Hb_000603_030 Hb_000120_280 Hb_000120_280 Hb_002681_090--Hb_000120_280 Hb_002815_030 Hb_002815_030 Hb_002681_090--Hb_002815_030 Hb_000170_090 Hb_000170_090 Hb_002681_090--Hb_000170_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.98114 5.60243 8.59622 6.96714 7.59139 10.5366
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.22262 7.27087 3.62558 9.69654 8.73381

CAGE analysis